Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016150A_C01 KMC016150A_c01
(712 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_084837.1| ribosomal protein L2 [Lotus japonicus] gi|13518... 478 e-134
sp|P27107|RK2_SINAL CHLOROPLAST 50S RIBOSOMAL PROTEIN L2 gi|1221... 451 e-126
ref|NP_054540.1| ribosomal protein L2 [Nicotiana tabacum] gi|114... 448 e-125
ref|NP_051099.1| ribosomal protein L2 [Arabidopsis thaliana] gi|... 447 e-125
gb|AAN04886.1| ribosomal protein L2 [Vigna angularis] gi|2272568... 446 e-124
>ref|NP_084837.1| ribosomal protein L2 [Lotus japonicus] gi|13518500|ref|NP_084858.1|
ribosomal protein L2 [Lotus japonicus]
gi|13359019|dbj|BAB33236.1| ribosomal protein L2 [Lotus
japonicus] gi|13359041|dbj|BAB33258.1| ribosomal protein
L2 [Lotus japonicus]
Length = 274
Score = 478 bits (1229), Expect = e-134
Identities = 233/233 (100%), Positives = 233/233 (100%)
Frame = +1
Query: 13 MAIHLYKTSTPSTRNRAVDSQVKSNPRNRLIYGLHCCSKGRNARGIITAGHRGGGHKRLY 192
MAIHLYKTSTPSTRNRAVDSQVKSNPRNRLIYGLHCCSKGRNARGIITAGHRGGGHKRLY
Sbjct: 1 MAIHLYKTSTPSTRNRAVDSQVKSNPRNRLIYGLHCCSKGRNARGIITAGHRGGGHKRLY 60
Query: 193 RKIDFRRNEKNIYGKIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 372
RKIDFRRNEKNIYGKIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV
Sbjct: 61 RKIDFRRNEKNIYGKIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120
Query: 373 PIKMGNALPLTDMPLGTAIHNIEITFGKGGKLARAAGAVAKLIAKEGKSATLKLPSGEVR 552
PIKMGNALPLTDMPLGTAIHNIEITFGKGGKLARAAGAVAKLIAKEGKSATLKLPSGEVR
Sbjct: 121 PIKMGNALPLTDMPLGTAIHNIEITFGKGGKLARAAGAVAKLIAKEGKSATLKLPSGEVR 180
Query: 553 LISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGG 711
LISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGG
Sbjct: 181 LISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGG 233
>sp|P27107|RK2_SINAL CHLOROPLAST 50S RIBOSOMAL PROTEIN L2 gi|12214|emb|CAA46568.1|
ribosomal protein L2 [Sinapis alba]
Length = 274
Score = 451 bits (1159), Expect = e-126
Identities = 221/233 (94%), Positives = 224/233 (95%)
Frame = +1
Query: 13 MAIHLYKTSTPSTRNRAVDSQVKSNPRNRLIYGLHCCSKGRNARGIITAGHRGGGHKRLY 192
MAIHLYKTSTPSTRN AVDSQVKSNPRN LIYG H C KGRNARGIIT HRGGGHKRLY
Sbjct: 1 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHHCGKGRNARGIITVRHRGGGHKRLY 60
Query: 193 RKIDFRRNEKNIYGKIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 372
RKIDFRRN K+IYG+IVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV
Sbjct: 61 RKIDFRRNTKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120
Query: 373 PIKMGNALPLTDMPLGTAIHNIEITFGKGGKLARAAGAVAKLIAKEGKSATLKLPSGEVR 552
PIKMGNALPLTDMPLGTAIHNIEIT GKGG+LARAAGAVAKLIAKEGKSATLKLPSGEVR
Sbjct: 121 PIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVR 180
Query: 553 LISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGG 711
LISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGG
Sbjct: 181 LISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGG 233
>ref|NP_054540.1| ribosomal protein L2 [Nicotiana tabacum]
gi|11466035|ref|NP_054577.1| ribosomal protein L2
[Nicotiana tabacum] gi|132866|sp|P06379|RK2_TOBAC
Chloroplast 50S ribosomal protein L2 gi|71086|pir||R5NT2
ribosomal protein L2 - common tobacco chloroplast
gi|435269|emb|CAA77384.1| ribosomal protein L2
[Nicotiana tabacum] gi|1223691|emb|CAA77409.1| ribosomal
protein L2 [Nicotiana tabacum] gi|225238|prf||1211235BW
ribosomal protein L2
Length = 274
Score = 448 bits (1153), Expect = e-125
Identities = 221/233 (94%), Positives = 224/233 (95%)
Frame = +1
Query: 13 MAIHLYKTSTPSTRNRAVDSQVKSNPRNRLIYGLHCCSKGRNARGIITAGHRGGGHKRLY 192
MAIHLYKTSTPSTRN VDSQVKSNPRN LIYG H C KGRNARGIITA HRGGGHKRLY
Sbjct: 1 MAIHLYKTSTPSTRNGTVDSQVKSNPRNNLIYGQHHCGKGRNARGIITARHRGGGHKRLY 60
Query: 193 RKIDFRRNEKNIYGKIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 372
RKIDFRRNEK+IYG+IVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV
Sbjct: 61 RKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120
Query: 373 PIKMGNALPLTDMPLGTAIHNIEITFGKGGKLARAAGAVAKLIAKEGKSATLKLPSGEVR 552
PIKMGNALPLTDMPLGTAIHNIEIT GKGG+LARAAGAVAKLIAKEGKSATLKLPSGEVR
Sbjct: 121 PIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVR 180
Query: 553 LISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGG 711
LISKNCSATVGQVGNVGVNQKSLGRAGSK WLGKRPVVRGVVMNPVDHPHGGG
Sbjct: 181 LISKNCSATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGG 233
>ref|NP_051099.1| ribosomal protein L2 [Arabidopsis thaliana]
gi|7525099|ref|NP_051123.1| ribosomal protein L2
[Arabidopsis thaliana] gi|6685857|sp|P56791|RK2_ARATH
Chloroplast 50S ribosomal protein L2
gi|5881735|dbj|BAA84426.1| ribosomal protein L2
[Arabidopsis thaliana] gi|5881760|dbj|BAA84451.1|
ribosomal protein L2 [Arabidopsis thaliana]
Length = 274
Score = 447 bits (1151), Expect = e-125
Identities = 220/233 (94%), Positives = 224/233 (95%)
Frame = +1
Query: 13 MAIHLYKTSTPSTRNRAVDSQVKSNPRNRLIYGLHCCSKGRNARGIITAGHRGGGHKRLY 192
MAIHLYKTSTPSTRN AVDSQVKSNPRN LI G H C KGRNARGIITA HRGGGHKRLY
Sbjct: 1 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLICGQHHCGKGRNARGIITARHRGGGHKRLY 60
Query: 193 RKIDFRRNEKNIYGKIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 372
RKIDFRRN K+IYG+IVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV
Sbjct: 61 RKIDFRRNAKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV 120
Query: 373 PIKMGNALPLTDMPLGTAIHNIEITFGKGGKLARAAGAVAKLIAKEGKSATLKLPSGEVR 552
PIKMGNALPLTDMPLGTAIHNIEIT G+GG+LARAAGAVAKLIAKEGKSATLKLPSGEVR
Sbjct: 121 PIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVR 180
Query: 553 LISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGG 711
LISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGG
Sbjct: 181 LISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGG 233
>gb|AAN04886.1| ribosomal protein L2 [Vigna angularis] gi|22725687|gb|AAN04893.1|
ribosomal protein L2 [Vigna angularis]
Length = 275
Score = 446 bits (1146), Expect = e-124
Identities = 219/234 (93%), Positives = 225/234 (95%), Gaps = 1/234 (0%)
Frame = +1
Query: 13 MAIHLYKTSTPSTRNRAVDS-QVKSNPRNRLIYGLHCCSKGRNARGIITAGHRGGGHKRL 189
MAIHLYKTSTPSTRN VDS QVKSNPRN LIYG H C KGRNARGIITAGHRGGGHKRL
Sbjct: 1 MAIHLYKTSTPSTRNGTVDSRQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRL 60
Query: 190 YRKIDFRRNEKNIYGKIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTE 369
YR+IDFRRNEKNIYG+IVTIEYDPNRNA ICLIHYGDGEK+YILHPRGAIIGDTIVSGTE
Sbjct: 61 YRQIDFRRNEKNIYGRIVTIEYDPNRNASICLIHYGDGEKKYILHPRGAIIGDTIVSGTE 120
Query: 370 VPIKMGNALPLTDMPLGTAIHNIEITFGKGGKLARAAGAVAKLIAKEGKSATLKLPSGEV 549
VPIKMGNALPLTDMPLGTAIHNIEIT GKGG+LARAAGAVAKLIAKEGKSATLKLPSGEV
Sbjct: 121 VPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEV 180
Query: 550 RLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGG 711
RLISKNCSATVGQVGNVGVNQK+LGRAGSKCWLGKRP+VRGVVMNPVDHPHGGG
Sbjct: 181 RLISKNCSATVGQVGNVGVNQKNLGRAGSKCWLGKRPIVRGVVMNPVDHPHGGG 234
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 711,344,744
Number of Sequences: 1393205
Number of extensions: 17567565
Number of successful extensions: 41379
Number of sequences better than 10.0: 381
Number of HSP's better than 10.0 without gapping: 39448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41066
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
