Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016105A_C01 KMC016105A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA19915.1| flocculin [Saccharomyces cerevisiae] 45 5e-04
pir||C86333 hypothetical protein T20H2.23 - Arabidopsis thaliana... 44 9e-04
ref|NP_173428.1| hypothetical protein; protein id: At1g19990.1 [... 44 9e-04
ref|NP_741625.1| Ligase LIG-1 (lig-1) [Caenorhabditis elegans] g... 42 0.006
pir||S51959 hypothetical protein YAL063c - yeast (Saccharomyces ... 39 0.028
>dbj|BAA19915.1| flocculin [Saccharomyces cerevisiae]
Length = 849
Score = 45.1 bits (105), Expect = 5e-04
Identities = 32/97 (32%), Positives = 45/97 (45%), Gaps = 4/97 (4%)
Frame = -1
Query: 521 SPVKAVAVVKSSTKSVTV----TKKSTPSPAPSLTKKATNSASKAPPKKRKSESISSEDD 354
SPV + +V+ SST + T + KS+ P S T ++ S + + S SISSE
Sbjct: 260 SPVISSSVISSSTTTSTSIFFESSKSSVIPTSSSTSGSSESKTSSASSSSSSSSISSESP 319
Query: 353 DSDYGTGSKAPAKKRKKVA*LCSSLTPIKSLDTSTTI 243
S Y + S P SSL P+ S+ TS I
Sbjct: 320 KSTYSSSSLPPVTSATTSQETASSLPPVTSVTTSQEI 356
>pir||C86333 hypothetical protein T20H2.23 - Arabidopsis thaliana
gi|8778999|gb|AAF79914.1|AC022472_23 Contains a weak
similarity to Rap8 (Rac-3-1) gene from Rhynchosciara
americana gb|U69899. [Arabidopsis thaliana]
Length = 651
Score = 44.3 bits (103), Expect = 9e-04
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = -1
Query: 521 SPVKAVAVV-KSSTKSVTVTKKSTP-SPAPSLTKKATNSASKAPPKKRKSESISSEDDDS 348
SPVK+ A +S++KSVTV KK SP+ +L+ K + SK KKRK S +DD
Sbjct: 579 SPVKSAASTPRSNSKSVTVKKKEVQKSPSEALSNKKKGNDSKPTTKKRKKN--SDDDDSD 636
Query: 347 DYGTGSKAPAKKRKK 303
D S+ K R K
Sbjct: 637 DDFLASRVSKKARAK 651
>ref|NP_173428.1| hypothetical protein; protein id: At1g19990.1 [Arabidopsis
thaliana]
Length = 251
Score = 44.3 bits (103), Expect = 9e-04
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = -1
Query: 521 SPVKAVAVV-KSSTKSVTVTKKSTP-SPAPSLTKKATNSASKAPPKKRKSESISSEDDDS 348
SPVK+ A +S++KSVTV KK SP+ +L+ K + SK KKRK S +DD
Sbjct: 179 SPVKSAASTPRSNSKSVTVKKKEVQKSPSEALSNKKKGNDSKPTTKKRKKN--SDDDDSD 236
Query: 347 DYGTGSKAPAKKRKK 303
D S+ K R K
Sbjct: 237 DDFLASRVSKKARAK 251
>ref|NP_741625.1| Ligase LIG-1 (lig-1) [Caenorhabditis elegans]
gi|2494164|sp|Q27474|DNLI_CAEEL DNA ligase
(Polydeoxyribonucleotide synthase [ATP])
gi|7496656|pir||T19544 hypothetical protein C29A12.3 -
Caenorhabditis elegans gi|3874600|emb|CAA98242.1| C.
elegans LIG-1 protein (corresponding sequence C29A12.3a)
[Caenorhabditis elegans]
Length = 847
Score = 41.6 bits (96), Expect = 0.006
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Frame = -1
Query: 518 PVKAVAVVKSSTKSVTVTKKSTPSPAP------SLTKKATNSASKAPPKKRKSESISSED 357
PVK+ V KS KS + K++ P S TKK P + + + S+
Sbjct: 760 PVKSSPVNKSPVKSSPIKKEAEKKKGPVASIFSSSTKKNEKDVKVESPSPIRKKKLPSDS 819
Query: 356 DDSD--YGTGSKAPAKKRKKVA 297
D+SD T K PAKKR +VA
Sbjct: 820 DESDEETSTNKKQPAKKRSRVA 841
>pir||S51959 hypothetical protein YAL063c - yeast (Saccharomyces cerevisiae)
Length = 1367
Score = 39.3 bits (90), Expect = 0.028
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Frame = -1
Query: 500 VVKSSTKSVTVTKKSTPS---PAPSLTKKATNSASKAPPKKRKSESISSEDDDSDYGTGS 330
V+ S+T S ++ +S+ S P S T ++ S + + S SISSE S Y + S
Sbjct: 977 VISSTTTSASILSESSKSSVIPTSSSTSGSSESETGSASSASSSSSISSESPKSTYSSSS 1036
Query: 329 KAPAKKRKKVA*LCSSLTPIKSLDTS 252
P + SSL P+ + TS
Sbjct: 1037 LPPVTSATTSQEITSSLPPVTTTKTS 1062
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 394,923,990
Number of Sequences: 1393205
Number of extensions: 7855617
Number of successful extensions: 37386
Number of sequences better than 10.0: 305
Number of HSP's better than 10.0 without gapping: 30840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36264
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
