Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016102A_C01 KMC016102A_c01
(621 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568209.1| branched-chain alpha keto-acid dehydrogenase E1... 238 4e-62
emb|CAC05456.1| branched-chain alpha keto-acid dehydrogenase E1 ... 238 4e-62
ref|NP_173562.1| branched-chain alpha keto-acid dehydrogenase, p... 234 9e-61
pir||T51858 branched-chain alpha keto-acid dehydrogenase E1 alph... 219 2e-56
ref|NP_198327.1| 3-methyl-2-oxobutanoate dehydrogenase-like prot... 217 1e-55
>ref|NP_568209.1| branched-chain alpha keto-acid dehydrogenase E1 alpha subunit-like
protein; protein id: At5g09300.1, supported by cDNA:
3693. [Arabidopsis thaliana] gi|28393751|gb|AAO42286.1|
putative branched-chain alpha keto-acid dehydrogenase E1
alpha subunit [Arabidopsis thaliana]
gi|28973423|gb|AAO64036.1| putative branched-chain alpha
keto-acid dehydrogenase E1 alpha subunit [Arabidopsis
thaliana]
Length = 472
Score = 238 bits (608), Expect = 4e-62
Identities = 109/156 (69%), Positives = 136/156 (86%)
Frame = -1
Query: 621 QAYGIWSIRVDGNDALAVYSAVHTAREIAIREQRPVLIEALTYRVGHHSTSDDSTKYRPV 442
+AYGI SIRVDGNDALA+YSAVHTARE+AIREQRP+LIEALTYRVGHHSTSDDST+YR
Sbjct: 317 RAYGIRSIRVDGNDALAMYSAVHTAREMAIREQRPILIEALTYRVGHHSTSDDSTRYRSA 376
Query: 441 DEIEYWKMARNPVNRFKRWVEMNGWWSDKDELELRSSVRKQLMNAIQVAEKAQKPPLEDL 262
EIE+W ARNP++RF+ W+E NGWWSDK E +LRS ++K+++ A++VAEK +KP L+++
Sbjct: 377 GEIEWWNKARNPLSRFRTWIESNGWWSDKTESDLRSRIKKEMLEALRVAEKTEKPNLQNM 436
Query: 261 FHDVYDQVPSNLQEQENLLRETIKKNPKDYPSDVPL 154
F DVYD PSNL+EQE L+R+TI +P+DYPSDVPL
Sbjct: 437 FSDVYDVPPSNLREQELLVRQTINSHPQDYPSDVPL 472
>emb|CAC05456.1| branched-chain alpha keto-acid dehydrogenase E1 alpha subunit-like
protein [Arabidopsis thaliana]
Length = 414
Score = 238 bits (608), Expect = 4e-62
Identities = 109/156 (69%), Positives = 136/156 (86%)
Frame = -1
Query: 621 QAYGIWSIRVDGNDALAVYSAVHTAREIAIREQRPVLIEALTYRVGHHSTSDDSTKYRPV 442
+AYGI SIRVDGNDALA+YSAVHTARE+AIREQRP+LIEALTYRVGHHSTSDDST+YR
Sbjct: 259 RAYGIRSIRVDGNDALAMYSAVHTAREMAIREQRPILIEALTYRVGHHSTSDDSTRYRSA 318
Query: 441 DEIEYWKMARNPVNRFKRWVEMNGWWSDKDELELRSSVRKQLMNAIQVAEKAQKPPLEDL 262
EIE+W ARNP++RF+ W+E NGWWSDK E +LRS ++K+++ A++VAEK +KP L+++
Sbjct: 319 GEIEWWNKARNPLSRFRTWIESNGWWSDKTESDLRSRIKKEMLEALRVAEKTEKPNLQNM 378
Query: 261 FHDVYDQVPSNLQEQENLLRETIKKNPKDYPSDVPL 154
F DVYD PSNL+EQE L+R+TI +P+DYPSDVPL
Sbjct: 379 FSDVYDVPPSNLREQELLVRQTINSHPQDYPSDVPL 414
>ref|NP_173562.1| branched-chain alpha keto-acid dehydrogenase, putative; protein id:
At1g21400.1, supported by cDNA: gi_20466297 [Arabidopsis
thaliana] gi|25284423|pir||A86347 branched-chain alpha
keto-acid dehydrogenase E1-alpha subunit [imported] -
Arabidopsis thaliana gi|9454571|gb|AAF87894.1|AC015447_4
branched-chain alpha keto-acid dehydrogenase E1 - alpha
subunit [Arabidopsis thaliana]
gi|20466298|gb|AAM20466.1| branched-chain alpha
keto-acid dehydrogenase, putative [Arabidopsis thaliana]
gi|23198122|gb|AAN15588.1| branched-chain alpha
keto-acid dehydrogenase, putative [Arabidopsis thaliana]
Length = 472
Score = 234 bits (596), Expect = 9e-61
Identities = 110/151 (72%), Positives = 130/151 (85%)
Frame = -1
Query: 621 QAYGIWSIRVDGNDALAVYSAVHTAREIAIREQRPVLIEALTYRVGHHSTSDDSTKYRPV 442
QAYGI SIRVDGNDALAVYSAV +ARE+A+ EQRPVLIE +TYRVGHHSTSDDSTKYR
Sbjct: 317 QAYGIRSIRVDGNDALAVYSAVRSAREMAVTEQRPVLIEMMTYRVGHHSTSDDSTKYRAA 376
Query: 441 DEIEYWKMARNPVNRFKRWVEMNGWWSDKDELELRSSVRKQLMNAIQVAEKAQKPPLEDL 262
DEI+YWKM+RNPVNRF++WVE NGWWS++DE +LRS+ RKQL+ AIQ AEK +K PL +L
Sbjct: 377 DEIQYWKMSRNPVNRFRKWVEDNGWWSEEDESKLRSNARKQLLQAIQAAEKWEKQPLTEL 436
Query: 261 FHDVYDQVPSNLQEQENLLRETIKKNPKDYP 169
F+DVYD P NL+EQE L+E +KK P+DYP
Sbjct: 437 FNDVYDVKPKNLEEQELGLKELVKKQPQDYP 467
>pir||T51858 branched-chain alpha keto-acid dehydrogenase E1 alpha chain
[imported] - Arabidopsis thaliana (fragment)
gi|3822223|gb|AAC69851.1| branched-chain alpha keto-acid
dehydrogenase E1 alpha subunit [Arabidopsis thaliana]
Length = 472
Score = 219 bits (559), Expect = 2e-56
Identities = 106/152 (69%), Positives = 126/152 (82%), Gaps = 1/152 (0%)
Frame = -1
Query: 621 QAYGIWSIRV-DGNDALAVYSAVHTAREIAIREQRPVLIEALTYRVGHHSTSDDSTKYRP 445
QAYGI V DG DALAVYSAV +ARE+A+ EQRPVLIE +TYRVGHHSTSDDSTKYR
Sbjct: 316 QAYGIPKHPVWDGTDALAVYSAVRSAREMAVTEQRPVLIEMMTYRVGHHSTSDDSTKYRA 375
Query: 444 VDEIEYWKMARNPVNRFKRWVEMNGWWSDKDELELRSSVRKQLMNAIQVAEKAQKPPLED 265
DEI+YWKM+RNPVNRF++WVE NGWWS++DE +LRS+ RKQL+ AIQ AEK +K PL +
Sbjct: 376 ADEIQYWKMSRNPVNRFRKWVEDNGWWSEEDESKLRSNARKQLLQAIQAAEKWEKQPLTE 435
Query: 264 LFHDVYDQVPSNLQEQENLLRETIKKNPKDYP 169
LF+DVYD P NL+EQE L+E +KK P+DYP
Sbjct: 436 LFNDVYDVKPKNLEEQELGLKELVKKQPQDYP 467
>ref|NP_198327.1| 3-methyl-2-oxobutanoate dehydrogenase-like protein; protein id:
At5g34780.1 [Arabidopsis thaliana]
Length = 365
Score = 217 bits (552), Expect = 1e-55
Identities = 105/150 (70%), Positives = 126/150 (84%)
Frame = -1
Query: 621 QAYGIWSIRVDGNDALAVYSAVHTAREIAIREQRPVLIEALTYRVGHHSTSDDSTKYRPV 442
QAYGI SIRVDGNDALAVYSAV +ARE+A+ EQRPVLIE + YRVGHHSTSDDSTKYR
Sbjct: 87 QAYGIRSIRVDGNDALAVYSAVCSAREMAVTEQRPVLIEMMIYRVGHHSTSDDSTKYRAA 146
Query: 441 DEIEYWKMARNPVNRFKRWVEMNGWWSDKDELELRSSVRKQLMNAIQVAEKAQKPPLEDL 262
DEI+YWKM+RN VNRF++ VE NGWWS++DE +LRS+ RKQL+ AIQ AEK +K PL +L
Sbjct: 147 DEIQYWKMSRNSVNRFRKSVEDNGWWSEEDESKLRSNARKQLLQAIQAAEKWEKQPLTEL 206
Query: 261 FHDVYDQVPSNLQEQENLLRETIKKNPKDY 172
F+DVYD P NL+E+E L+E I+K P+DY
Sbjct: 207 FNDVYDVKPKNLEEEELGLKELIEKQPQDY 236
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,306,579
Number of Sequences: 1393205
Number of extensions: 10675824
Number of successful extensions: 34954
Number of sequences better than 10.0: 290
Number of HSP's better than 10.0 without gapping: 33531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34828
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
