Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016086A_C01 KMC016086A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200656.1| glycosyl hydrolase family 17; protein id: At5g5... 122 4e-27
dbj|BAB10263.1| beta-1,3-glucanase-like [Arabidopsis thaliana] g... 122 4e-27
ref|NP_197587.1| glycosyl hydrolase family 17; protein id: At5g2... 93 3e-18
dbj|BAC22313.1| putative glycosyl hydrolase family protein [Oryz... 92 4e-18
ref|NP_193451.1| glycosyl hydrolase family 17; protein id: At4g1... 87 1e-16
>ref|NP_200656.1| glycosyl hydrolase family 17; protein id: At5g58480.1 [Arabidopsis
thaliana]
Length = 465
Score = 122 bits (305), Expect = 4e-27
Identities = 58/91 (63%), Positives = 69/91 (75%), Gaps = 1/91 (1%)
Frame = -3
Query: 572 ASEACANADCTALSPGGSCFNISWPSNISYAFNSYYQQHDQTAESCDFGGLGLITTVDPS 393
A EACA ADCT++ PGGSC I WP N+SYAFNS YQQ+D +AESC+FGGLGLITTVDPS
Sbjct: 368 ALEACAVADCTSILPGGSCSGIRWPGNVSYAFNSLYQQNDHSAESCNFGGLGLITTVDPS 427
Query: 392 MDRCRFPIEIRTSQAESSRVCSFQ-WMILLV 303
D CRF I++ TS + S FQ W +LL+
Sbjct: 428 EDNCRFSIQLDTSHSSSQTPNFFQSWPLLLL 458
>dbj|BAB10263.1| beta-1,3-glucanase-like [Arabidopsis thaliana]
gi|28393035|gb|AAO41952.1| putative glycosyl hydrolase
family 17 protein [Arabidopsis thaliana]
gi|28827612|gb|AAO50650.1| putative glycosyl hydrolase
family 17 protein [Arabidopsis thaliana]
Length = 476
Score = 122 bits (305), Expect = 4e-27
Identities = 58/91 (63%), Positives = 69/91 (75%), Gaps = 1/91 (1%)
Frame = -3
Query: 572 ASEACANADCTALSPGGSCFNISWPSNISYAFNSYYQQHDQTAESCDFGGLGLITTVDPS 393
A EACA ADCT++ PGGSC I WP N+SYAFNS YQQ+D +AESC+FGGLGLITTVDPS
Sbjct: 379 ALEACAVADCTSILPGGSCSGIRWPGNVSYAFNSLYQQNDHSAESCNFGGLGLITTVDPS 438
Query: 392 MDRCRFPIEIRTSQAESSRVCSFQ-WMILLV 303
D CRF I++ TS + S FQ W +LL+
Sbjct: 439 EDNCRFSIQLDTSHSSSQTPNFFQSWPLLLL 469
>ref|NP_197587.1| glycosyl hydrolase family 17; protein id: At5g20870.1 [Arabidopsis
thaliana]
Length = 501
Score = 92.8 bits (229), Expect = 3e-18
Identities = 42/78 (53%), Positives = 53/78 (67%)
Frame = -3
Query: 572 ASEACANADCTALSPGGSCFNISWPSNISYAFNSYYQQHDQTAESCDFGGLGLITTVDPS 393
A+ AC NADCT+L PG SC + +N SYAFN Y+Q+ D SCDF LG++T +DPS
Sbjct: 394 ATYACQNADCTSLGPGSSCAALDPTANASYAFNMYFQKMDHRRGSCDFNNLGVVTKIDPS 453
Query: 392 MDRCRFPIEIRTSQAESS 339
CRFPIEI TS+ + S
Sbjct: 454 SGSCRFPIEIDTSRQQMS 471
>dbj|BAC22313.1| putative glycosyl hydrolase family protein [Oryza sativa (japonica
cultivar-group)]
Length = 516
Score = 92.4 bits (228), Expect = 4e-18
Identities = 51/96 (53%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Frame = -3
Query: 563 ACANADCTALSPGGSCFNISWPSNISYAFNSYYQQHDQTAESCDFGGLGLITTVDPSMDR 384
AC ADCT L GGSC I NISYAFNSYYQ Q A+SCDF GLG+IT +DPS+
Sbjct: 412 ACTMADCTTLYYGGSCNAIGEKGNISYAFNSYYQLRKQDAQSCDFDGLGMITYLDPSIGD 471
Query: 383 CRFPIEI---RTSQAESSRVCSFQWMILLVTTFLAV 285
CRF + I RTS SS CS + L + FL +
Sbjct: 472 CRFLVGIDDSRTSTIYSSGDCSRRRFGLWILAFLVI 507
>ref|NP_193451.1| glycosyl hydrolase family 17; protein id: At4g17180.1 [Arabidopsis
thaliana] gi|7488109|pir||F71440 probable glucanase -
Arabidopsis thaliana gi|2245077|emb|CAB10499.1|
glucanase like protein [Arabidopsis thaliana]
gi|7268469|emb|CAB80989.1| glucanase like protein
[Arabidopsis thaliana]
Length = 502
Score = 87.4 bits (215), Expect = 1e-16
Identities = 41/84 (48%), Positives = 52/84 (61%)
Frame = -3
Query: 563 ACANADCTALSPGGSCFNISWPSNISYAFNSYYQQHDQTAESCDFGGLGLITTVDPSMDR 384
AC+ ADCT L+ GGSC + NISYAFNSYYQ Q +SCDF GLG++T +DPS+
Sbjct: 405 ACSEADCTTLNDGGSCSQLGEKDNISYAFNSYYQMQMQHEKSCDFDGLGMVTFLDPSVGD 464
Query: 383 CRFPIEIRTSQAESSRVCSFQWMI 312
CRF + + SS +W I
Sbjct: 465 CRFLVGVTDIGLSSSTEPMARWSI 488
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,520,806
Number of Sequences: 1393205
Number of extensions: 8971964
Number of successful extensions: 27182
Number of sequences better than 10.0: 142
Number of HSP's better than 10.0 without gapping: 26756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27096
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
