Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016085A_C01 KMC016085A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194206.1| putative protein; protein id: At4g24750.1 [Arab... 159 3e-38
gb|AAL69515.1| putative rhodanese family protein [Arabidopsis th... 55 7e-07
gb|AAM64600.1| rhodanese-like family protein [Arabidopsis thaliana] 55 7e-07
ref|NP_566337.1| rhodanese-like domain protein; protein id: At3g... 55 7e-07
gb|AAK73974.1| At2g42220/T24P15.13 [Arabidopsis thaliana] 41 0.010
>ref|NP_194206.1| putative protein; protein id: At4g24750.1 [Arabidopsis thaliana]
gi|7485973|pir||T05559 hypothetical protein F22K18.50 -
Arabidopsis thaliana gi|4220515|emb|CAA22988.1| putative
protein [Arabidopsis thaliana]
gi|7269326|emb|CAB79385.1| putative protein [Arabidopsis
thaliana]
Length = 260
Score = 159 bits (401), Expect = 3e-38
Identities = 72/91 (79%), Positives = 83/91 (91%)
Frame = -2
Query: 528 YKNLFWVQGGLEAAEDEDLVVEGPVPLKFAGIGGVSEFLGWTDQQRAAAAKEGWGYRLVF 349
Y+NLFWVQGGLE+A+DEDLV EG PLK AGIGG SEFLGWTDQQRA AAKEGWGYRLV+
Sbjct: 170 YENLFWVQGGLESAQDEDLVTEGVQPLKLAGIGGFSEFLGWTDQQRAQAAKEGWGYRLVY 229
Query: 348 SARLLGILLAADALFIGAQQIGHYLQEIRTH 256
+ARL G++LAADALF+GAQQ+GHY+QE+R H
Sbjct: 230 TARLFGVVLAADALFVGAQQLGHYIQELRGH 260
>gb|AAL69515.1| putative rhodanese family protein [Arabidopsis thaliana]
Length = 213
Score = 55.1 bits (131), Expect = 7e-07
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Frame = -2
Query: 594 LIVACQKGVRSLAACELLYNAGYKNLFWVQGGLEAAEDEDL-VVEGPVPLKFAGIGGVSE 418
++V C +G+RSLAA L+ GYK+L W+ GG + D +EG L+FA IGGVS
Sbjct: 137 VLVVCGEGLRSLAAVSKLHGEGYKSLGWLTGGFNRVSEGDFPEIEGTEELRFATIGGVSF 196
Query: 417 FL 412
+L
Sbjct: 197 YL 198
>gb|AAM64600.1| rhodanese-like family protein [Arabidopsis thaliana]
Length = 214
Score = 55.1 bits (131), Expect = 7e-07
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Frame = -2
Query: 594 LIVACQKGVRSLAACELLYNAGYKNLFWVQGGLEAAEDEDL-VVEGPVPLKFAGIGGVSE 418
++V C +G+RSLAA L+ GYK+L W+ GG + D +EG L+FA IGGVS
Sbjct: 138 VLVVCGEGLRSLAAVSKLHGEGYKSLGWLTGGFNRVSEGDFPEIEGTEELRFATIGGVSF 197
Query: 417 FL 412
+L
Sbjct: 198 YL 199
>ref|NP_566337.1| rhodanese-like domain protein; protein id: At3g08920.1, supported
by cDNA: 30880. [Arabidopsis thaliana]
gi|6403493|gb|AAF07833.1|AC010871_9 unknown protein
[Arabidopsis thaliana] gi|26983812|gb|AAN86158.1|
putative rhodanese family protein [Arabidopsis thaliana]
Length = 214
Score = 55.1 bits (131), Expect = 7e-07
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Frame = -2
Query: 594 LIVACQKGVRSLAACELLYNAGYKNLFWVQGGLEAAEDEDL-VVEGPVPLKFAGIGGVSE 418
++V C +G+RSLAA L+ GYK+L W+ GG + D +EG L+FA IGGVS
Sbjct: 138 VLVVCGEGLRSLAAVSKLHGEGYKSLGWLTGGFNRVSEGDFPEIEGTEELRFATIGGVSF 197
Query: 417 FL 412
+L
Sbjct: 198 YL 199
>gb|AAK73974.1| At2g42220/T24P15.13 [Arabidopsis thaliana]
Length = 227
Score = 41.2 bits (95), Expect = 0.010
Identities = 22/62 (35%), Positives = 33/62 (52%)
Frame = -2
Query: 594 LIVACQKGVRSLAACELLYNAGYKNLFWVQGGLEAAEDEDLVVEGPVPLKFAGIGGVSEF 415
L++ CQ+G+RS AA L AGY+N+ V GL++ + G L+ AG G+
Sbjct: 134 LLLVCQEGLRSAAAASRLEEAGYENIACVTSGLQSVKPGTFESVGSTELQNAGKAGLITI 193
Query: 414 LG 409
G
Sbjct: 194 QG 195
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 493,288,576
Number of Sequences: 1393205
Number of extensions: 10560909
Number of successful extensions: 29751
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 28326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29631
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
