Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016049A_C01 KMC016049A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563680.1| expressed protein; protein id: At1g03250.1, sup... 117 8e-26
pir||H86163 hypothetical protein F15K9.15 [imported] - Arabidops... 78 7e-14
ref|NP_622649.1| conserved hypothetical protein [Thermoanaerobac... 34 1.5
dbj|BAA35931.1| SocA3 protein [Escherichia coli K12] 33 2.0
ref|NP_707026.1| ycfQ gene product [Shigella flexneri 2a str. 30... 33 2.0
>ref|NP_563680.1| expressed protein; protein id: At1g03250.1, supported by cDNA:
40461. [Arabidopsis thaliana] gi|21593601|gb|AAM65568.1|
unknown [Arabidopsis thaliana]
gi|22022560|gb|AAM83237.1| At1g03250/F15K9_13
[Arabidopsis thaliana] gi|23308263|gb|AAN18101.1|
At1g03250/F15K9_13 [Arabidopsis thaliana]
Length = 245
Score = 117 bits (294), Expect = 8e-26
Identities = 60/98 (61%), Positives = 73/98 (74%), Gaps = 1/98 (1%)
Frame = -2
Query: 585 RRSSLSELIEGYEECVRTFITEKTDGDVLELQIQDPFHRLLLHGVCEFYNLASDTVTDFN 406
RRS L ELIEGYE C+ FI E +GDVLEL++QDPFHRLLLHGVCE++NL S T T+
Sbjct: 148 RRSFLPELIEGYESCISHFIEEGGEGDVLELKVQDPFHRLLLHGVCEYHNLVSTTATEQI 207
Query: 405 GGESSKMTKIKKKKRG-SPEILKITLSHFLKMTKEGSW 295
G + K T IK KK G S E I+L+HFL+M+KEG+W
Sbjct: 208 GRIAMKTTSIKWKKSGDSGEKPSISLAHFLRMSKEGAW 245
>pir||H86163 hypothetical protein F15K9.15 [imported] - Arabidopsis thaliana
gi|3850581|gb|AAC72121.1| EST gb|N96383 comes from this
gene. [Arabidopsis thaliana]
Length = 256
Score = 78.2 bits (191), Expect = 7e-14
Identities = 36/50 (72%), Positives = 40/50 (80%)
Frame = -2
Query: 585 RRSSLSELIEGYEECVRTFITEKTDGDVLELQIQDPFHRLLLHGVCEFYN 436
RRS L ELIEGYE C+ FI E +GDVLEL++QDPFHRLLLHGVCE N
Sbjct: 148 RRSFLPELIEGYESCISHFIEEGGEGDVLELKVQDPFHRLLLHGVCEMLN 197
>ref|NP_622649.1| conserved hypothetical protein [Thermoanaerobacter tengcongensis]
gi|20516005|gb|AAM24253.1| conserved hypothetical
protein [Thermoanaerobacter tengcongensis]
Length = 66
Score = 33.9 bits (76), Expect = 1.5
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +1
Query: 190 KRQVLFMFKRRSTTKIKGFILWTVDNKQQLHLKKLPTSFLGHFQKM 327
KR VL KRRS +IKGFI VD+K + + L F ++KM
Sbjct: 4 KRAVLENLKRRSKEEIKGFIQEVVDSKNENAIPGLGVIFEAAWEKM 49
>dbj|BAA35931.1| SocA3 protein [Escherichia coli K12]
Length = 199
Score = 33.5 bits (75), Expect = 2.0
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -2
Query: 465 LLHGVCEFYNLASDTVTDFNGGESSKMTKIKKKKRGSPEI 346
L++G FYN S TVT +NG ++ T+ KK RG P++
Sbjct: 5 LVNGGDYFYNNLSFTVTRYNGIMATDSTQCVKKSRGRPKV 44
>ref|NP_707026.1| ycfQ gene product [Shigella flexneri 2a str. 301]
gi|24051406|gb|AAN42733.1|AE015138_9 ycfQ gene product
[Shigella flexneri 2a str. 301]
Length = 236
Score = 33.5 bits (75), Expect = 2.0
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -2
Query: 465 LLHGVCEFYNLASDTVTDFNGGESSKMTKIKKKKRGSPEI 346
L++G FYN S TVT +NG ++ T+ KK RG P++
Sbjct: 5 LVNGGDYFYNNLSFTVTRYNGIMATDSTQCVKKSRGRPKV 44
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,225,004
Number of Sequences: 1393205
Number of extensions: 10261061
Number of successful extensions: 23910
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 23227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23898
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
