Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016030A_C01 KMC016030A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193716.1| glycosyl hydrolase family 18; protein id: At4g1... 124 7e-28
emb|CAA54373.1| chitinase, class V [Nicotiana tabacum] 119 2e-26
pir||S51591 chitinase (EC 3.2.1.14) / lysozyme (EC 3.2.1.17) PZ ... 119 2e-26
emb|CAA54374.1| chitinase, class V [Nicotiana tabacum] 115 4e-25
ref|NP_193717.1| glycosyl hydrolase family 18; protein id: At4g1... 102 3e-21
>ref|NP_193716.1| glycosyl hydrolase family 18; protein id: At4g19810.1 [Arabidopsis
thaliana] gi|7435380|pir||T04762 chitinase homolog
T16H5.170 - Arabidopsis thaliana
gi|3250690|emb|CAA19698.1| putative chitinase
[Arabidopsis thaliana] gi|7268777|emb|CAB78983.1|
putative chitinase [Arabidopsis thaliana]
Length = 379
Score = 124 bits (312), Expect = 7e-28
Identities = 60/117 (51%), Positives = 75/117 (63%), Gaps = 9/117 (7%)
Frame = -1
Query: 588 KLALGLPFYGFKWSLSDPNQHRLFAPATK---------GLGQVKYKDIKNAGAQIVYNST 436
K LG P+YG+ W L++ N H +AP T G GQ++ K I + GA VYNST
Sbjct: 251 KAVLGFPYYGYAWRLTNANSHSYYAPTTGAAISPDGSIGYGQIR-KFIVDNGATTVYNST 309
Query: 435 FVTNYCFKGTDWFGYDDTQSIAAKVSYAKQKGLFGYFAWQIEQDSNWALSQAASQAW 265
V +YC+ GT+W GYDD QSI KV YAKQ+GL GYF+W + D N LS+AASQAW
Sbjct: 310 VVGDYCYAGTNWIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNSGLSRAASQAW 366
>emb|CAA54373.1| chitinase, class V [Nicotiana tabacum]
Length = 369
Score = 119 bits (299), Expect = 2e-26
Identities = 57/120 (47%), Positives = 74/120 (61%), Gaps = 11/120 (9%)
Frame = -1
Query: 588 KLALGLPFYGFKWSLSDPNQHRLFAPATKGL-------GQVKYKDIKN----AGAQIVYN 442
KL LG+PFYG+ W L +PN H L APA G + Y I++ + A VYN
Sbjct: 243 KLVLGIPFYGYAWRLVNPNIHDLRAPAAGKSNVGAVDDGSMTYNRIRDYIVQSRATTVYN 302
Query: 441 STFVTNYCFKGTDWFGYDDTQSIAAKVSYAKQKGLFGYFAWQIEQDSNWALSQAASQAWG 262
+T V +YC+ G++W YDDTQS+ KV+Y K +GL GYFAW + D NW LS+ ASQ WG
Sbjct: 303 ATIVGDYCYSGSNWISYDDTQSVRNKVNYVKGRGLLGYFAWHVAGDQNWGLSRTASQTWG 362
>pir||S51591 chitinase (EC 3.2.1.14) / lysozyme (EC 3.2.1.17) PZ precursor,
pathogenesis-related - common tobacco
gi|467689|emb|CAA55128.1| chitinase/lysozyme [Nicotiana
tabacum]
Length = 378
Score = 119 bits (299), Expect = 2e-26
Identities = 57/120 (47%), Positives = 74/120 (61%), Gaps = 11/120 (9%)
Frame = -1
Query: 588 KLALGLPFYGFKWSLSDPNQHRLFAPATKGL-------GQVKYKDIKN----AGAQIVYN 442
KL LG+PFYG+ W L +PN H L APA G + Y I++ + A VYN
Sbjct: 252 KLVLGIPFYGYAWRLVNPNIHDLRAPAAGKSNVGAVDDGSMTYNRIRDYIVQSRATTVYN 311
Query: 441 STFVTNYCFKGTDWFGYDDTQSIAAKVSYAKQKGLFGYFAWQIEQDSNWALSQAASQAWG 262
+T V +YC+ G++W YDDTQS+ KV+Y K +GL GYFAW + D NW LS+ ASQ WG
Sbjct: 312 ATIVGDYCYSGSNWISYDDTQSVRNKVNYVKGRGLLGYFAWHVAGDQNWGLSRTASQTWG 371
>emb|CAA54374.1| chitinase, class V [Nicotiana tabacum]
Length = 377
Score = 115 bits (288), Expect = 4e-25
Identities = 55/120 (45%), Positives = 73/120 (60%), Gaps = 11/120 (9%)
Frame = -1
Query: 588 KLALGLPFYGFKWSLSDPNQHRLFAPATKGL-------GQVKYKDIKN----AGAQIVYN 442
KL LG+PFYG+ W L + N H L APA G + Y I++ + A VYN
Sbjct: 251 KLVLGIPFYGYAWRLVNANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVESRATTVYN 310
Query: 441 STFVTNYCFKGTDWFGYDDTQSIAAKVSYAKQKGLFGYFAWQIEQDSNWALSQAASQAWG 262
+T V +YC+ G++W YDDTQ++ KV+Y K +GL GYFAW + D NW LS+ ASQ WG
Sbjct: 311 ATIVGDYCYSGSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLSRTASQTWG 370
>ref|NP_193717.1| glycosyl hydrolase family 18; protein id: At4g19820.1 [Arabidopsis
thaliana] gi|7435381|pir||T04763 chitinase homolog
T16H5.180 - Arabidopsis thaliana
gi|3250691|emb|CAA19699.1| putative chitinase
[Arabidopsis thaliana] gi|7268778|emb|CAB78984.1|
putative chitinase [Arabidopsis thaliana]
Length = 366
Score = 102 bits (255), Expect = 3e-21
Identities = 52/113 (46%), Positives = 63/113 (55%), Gaps = 8/113 (7%)
Frame = -1
Query: 588 KLALGLPFYGFKWSLSDPNQHRLFA----PATKGLGQVKYKDIK----NAGAQIVYNSTF 433
K LG P YG+ W L+D H +A PA G + Y I+ + A +VYNS
Sbjct: 249 KAVLGFPLYGYAWCLTDAKNHNYYANSSGPAISPDGSIGYDQIRRFIVDNKATMVYNSNL 308
Query: 432 VTNYCFKGTDWFGYDDTQSIAAKVSYAKQKGLFGYFAWQIEQDSNWALSQAAS 274
V NYC+ W GYDD QSI KV YAKQ+GL GYF+W I D N LS+A S
Sbjct: 309 VQNYCYAKKTWIGYDDNQSIVMKVKYAKQRGLLGYFSWHIGADDNSRLSRAGS 361
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,112,759
Number of Sequences: 1393205
Number of extensions: 10387540
Number of successful extensions: 30936
Number of sequences better than 10.0: 409
Number of HSP's better than 10.0 without gapping: 29428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30723
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
