Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016013A_C01 KMC016013A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D86278 hypothetical protein F14L17.16 - Arabidopsis thalian... 182 2e-45
ref|NP_172891.1| leucine-rich repeat transmembrane protein kinas... 175 4e-43
gb|AAO42008.1| putative leucine-rich repeat transmembrane protei... 174 6e-43
ref|NP_178381.1| leucine-rich repeat transmembrane protein kinas... 174 8e-43
ref|NP_566213.1| leucine-rich repeat transmembrane protein kinas... 139 3e-32
>pir||D86278 hypothetical protein F14L17.16 - Arabidopsis thaliana
gi|7262681|gb|AAF43939.1|AC012188_16 Contains similarity
to a Receptor-like Protein Kinase 5 Precursor from
Arabidopsis thaliana gi|1350783 and contains an
Eukaryotic Protein Kinase PF|00069 domain and Leucine
Rich PF|00560 repeats
Length = 728
Score = 182 bits (463), Expect = 2e-45
Identities = 94/162 (58%), Positives = 118/162 (72%), Gaps = 2/162 (1%)
Frame = -3
Query: 590 GVQFLHTEITPAIFGNNLKIHNILLDDSLNAKLSGYNIPLPSKED-NLESTHSAEKEDIY 414
G+QFLHT + P IFGNNL+I N+LLD++L KLSGY+IPLPSK S EKED+Y
Sbjct: 561 GIQFLHTGVAPGIFGNNLEIENVLLDETLTVKLSGYSIPLPSKVGAESPSNEDGEKEDVY 620
Query: 413 LLGVILLEVITGRQIAT-SSEVQELKDELETGSSDTASILLRSAIDPSLRGSYAYESMRT 237
GVIL+++ITG+ IA SSE+ LK +LE D S+L RS DP +RG+YAYES+RT
Sbjct: 621 QFGVILIQIITGKVIAAASSELGSLKLQLENSLRDEPSVL-RSLADPCVRGTYAYESLRT 679
Query: 236 AVQITINCLSKVPSKRPSIEDVLWNLHYSMQVQESWTSSGNL 111
V+ INCL + KRPSIEDV+WNL Y++QVQ+ WTSS NL
Sbjct: 680 TVEFAINCLCEDQRKRPSIEDVVWNLQYTIQVQQGWTSSENL 721
>ref|NP_172891.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At1g14390.1 [Arabidopsis thaliana]
Length = 747
Score = 175 bits (443), Expect = 4e-43
Identities = 94/181 (51%), Positives = 118/181 (64%), Gaps = 21/181 (11%)
Frame = -3
Query: 590 GVQFLHTEITPAIFGNNLKIHNILLDDSLNAKLSGYNIPLPSK----------------- 462
G+QFLHT + P IFGNNL+I N+LLD++L KLSGY+IPLPSK
Sbjct: 561 GIQFLHTGVAPGIFGNNLEIENVLLDETLTVKLSGYSIPLPSKLLIFSLTSHEIYNLLGE 620
Query: 461 ---EDNLESTHSAEKEDIYLLGVILLEVITGRQIAT-SSEVQELKDELETGSSDTASILL 294
S EKED+Y GVIL+++ITG+ IA SSE+ LK +LE D S+L
Sbjct: 621 FQVGAESPSNEDGEKEDVYQFGVILIQIITGKVIAAASSELGSLKLQLENSLRDEPSVL- 679
Query: 293 RSAIDPSLRGSYAYESMRTAVQITINCLSKVPSKRPSIEDVLWNLHYSMQVQESWTSSGN 114
RS DP +RG+YAYES+RT V+ INCL + KRPSIEDV+WNL Y++QVQ+ WTSS N
Sbjct: 680 RSLADPCVRGTYAYESLRTTVEFAINCLCEDQRKRPSIEDVVWNLQYTIQVQQGWTSSEN 739
Query: 113 L 111
L
Sbjct: 740 L 740
>gb|AAO42008.1| putative leucine-rich repeat transmembrane protein kinase
[Arabidopsis thaliana]
Length = 176
Score = 174 bits (442), Expect = 6e-43
Identities = 93/167 (55%), Positives = 116/167 (68%), Gaps = 9/167 (5%)
Frame = -3
Query: 587 VQFLHTEITPAIFGNNLKIHNILLDDSLNAKLSGYNIPLPSK-------EDNLESTHSAE 429
+QFLH + P IFGNNLKI NI+LD++L K+SGY IPLPSK S E
Sbjct: 1 IQFLHMGVAPGIFGNNLKIENIMLDETLTVKISGYTIPLPSKVGEERPQAKKPRSNEDRE 60
Query: 428 KEDIYLLGVILLEVITGRQIAT-SSEVQELKDELETGSSDTASILLRSAIDPSLRGSYAY 252
KED+Y GVILL++ITG+ +A SSE+ LK +LE G D S+L S DPS++GSYAY
Sbjct: 61 KEDVYQFGVILLQIITGKVVAAGSSEMGSLKLQLENGLRDEPSVL-SSLADPSVKGSYAY 119
Query: 251 ESMRTAVQITINCLSKVPSKRPSIEDVLWNLHYSMQVQESW-TSSGN 114
ES+RT V+ INCL + SKRPSIEDV+WNL Y++QVQ+ W SSGN
Sbjct: 120 ESLRTTVEFAINCLCEDQSKRPSIEDVVWNLQYTIQVQQGWRPSSGN 166
>ref|NP_178381.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At2g02780.1 [Arabidopsis thaliana]
gi|7487258|pir||T00850 probable receptor-like protein
kinase [imported] - Arabidopsis thaliana
gi|2947063|gb|AAC05344.1| putative receptor-like protein
kinase [Arabidopsis thaliana]
Length = 735
Score = 174 bits (441), Expect = 8e-43
Identities = 92/161 (57%), Positives = 115/161 (71%), Gaps = 2/161 (1%)
Frame = -3
Query: 590 GVQFLHTEITPAIFGNNLKIHNILLDDSLNAKLSGYNIPLPSKEDNLESTHSAEKEDIYL 411
G+QFLH + P IFGNNLKI NI+LD++L K+SGY IPLPSK KED+Y
Sbjct: 577 GIQFLHMGVAPGIFGNNLKIENIMLDETLTVKISGYTIPLPSK-----------KEDVYQ 625
Query: 410 LGVILLEVITGRQIAT-SSEVQELKDELETGSSDTASILLRSAIDPSLRGSYAYESMRTA 234
GVILL++ITG+ +A SSE+ LK +LE G D S+L S DPS++GSYAYES+RT
Sbjct: 626 FGVILLQIITGKVVAAGSSEMGSLKLQLENGLRDEPSVL-SSLADPSVKGSYAYESLRTT 684
Query: 233 VQITINCLSKVPSKRPSIEDVLWNLHYSMQVQESW-TSSGN 114
V+ INCL + SKRPSIEDV+WNL Y++QVQ+ W SSGN
Sbjct: 685 VEFAINCLCEDQSKRPSIEDVVWNLQYTIQVQQGWRPSSGN 725
>ref|NP_566213.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At3g03770.1, supported by cDNA: 116488. [Arabidopsis
thaliana] gi|21536973|gb|AAM61314.1| unknown [Arabidopsis
thaliana]
Length = 802
Score = 139 bits (349), Expect = 3e-32
Identities = 77/178 (43%), Positives = 110/178 (61%), Gaps = 14/178 (7%)
Frame = -3
Query: 590 GVQFLHTEITPAIFGNNLKIHNILLDDSLNAKLSGYNIPL-------------PSKEDNL 450
G+QFLHT I P ++ NNLK+ +ILLD++L AKLS YN+PL S
Sbjct: 593 GIQFLHTGIVPGVYDNNLKMTDILLDNNLAAKLSSYNLPLLVEGLGKVGQVGSRSGPKGT 652
Query: 449 ESTHSAEKEDIYLLGVILLEVITGRQIATSSEVQELKDELETG-SSDTASILLRSAIDPS 273
S +K DIY GVILLE+I GR + S+V LK++L+ S+D + RS +DP+
Sbjct: 653 PSIKDEDKIDIYDFGVILLELIVGRPLRAKSQVDVLKEQLQASISADDGA--RRSMVDPT 710
Query: 272 LRGSYAYESMRTAVQITINCLSKVPSKRPSIEDVLWNLHYSMQVQESWTSSGNLSTKL 99
+ + + +S++T ++I + CL K P +RPSIEDVLWNL ++ QVQE W + N S+ L
Sbjct: 711 VHRACSDQSLKTMMEICVRCLLKDPLERPSIEDVLWNLQFASQVQEGWLQNSNPSSNL 768
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,335,602
Number of Sequences: 1393205
Number of extensions: 9726305
Number of successful extensions: 27883
Number of sequences better than 10.0: 1861
Number of HSP's better than 10.0 without gapping: 24659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25641
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
