Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016005A_C01 KMC016005A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P54776|PRSA_LYCES 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG ... 238 4e-62
gb|AAN15459.1| 26S proteasome AAA-ATPase subunit RPT5a [Arabidop... 237 9e-62
ref|NP_187204.1| 26S proteasome AAA-ATPase subunit RPT5a; protei... 237 9e-62
sp|O23894|PRSA_BRACM 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG ... 237 9e-62
dbj|BAB21595.1| Tat binding protein like protein [Brassica rapa] 237 9e-62
>sp|P54776|PRSA_LYCES 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 1) (TBP-1) (MG(2+)-DEPENDENT ATPASE 1) (LEMA-1)
gi|1362099|pir||S56672 probable 26S proteinase chain
MA-1 - tomato gi|732815|emb|CAA52445.1| Mg-dependent
ATPase 1 [Lycopersicon esculentum]
Length = 423
Score = 238 bits (607), Expect = 4e-62
Identities = 120/121 (99%), Positives = 120/121 (99%)
Frame = -2
Query: 573 GFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPD 394
GFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPD
Sbjct: 303 GFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPD 362
Query: 393 VNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 214
VNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEV HEDFNEGIIQVQAKKKASLNYY
Sbjct: 363 VNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKKKASLNYY 422
Query: 213 A 211
A
Sbjct: 423 A 423
>gb|AAN15459.1| 26S proteasome AAA-ATPase subunit RPT5a [Arabidopsis thaliana]
Length = 424
Score = 237 bits (604), Expect = 9e-62
Identities = 119/121 (98%), Positives = 121/121 (99%)
Frame = -2
Query: 573 GFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPD 394
GFSSD+RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNV+PD
Sbjct: 304 GFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPD 363
Query: 393 VNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 214
VNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY
Sbjct: 364 VNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 423
Query: 213 A 211
A
Sbjct: 424 A 424
>ref|NP_187204.1| 26S proteasome AAA-ATPase subunit RPT5a; protein id: At3g05530.1,
supported by cDNA: gi_17065257, supported by cDNA:
gi_5669046, supported by cDNA: gi_6652885 [Arabidopsis
thaliana] gi|6652886|gb|AAF22525.1|AF123394_1 26S
proteasome AAA-ATPase subunit RPT5a [Arabidopsis
thaliana] gi|7596759|gb|AAF64530.1| 26S proteasome
AAA-ATPase subunit RPT5a [Arabidopsis thaliana]
gi|17065258|gb|AAL32783.1| 26S proteasome AAA-ATPase
subunit RPT5a [Arabidopsis thaliana]
Length = 424
Score = 237 bits (604), Expect = 9e-62
Identities = 119/121 (98%), Positives = 121/121 (99%)
Frame = -2
Query: 573 GFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPD 394
GFSSD+RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNV+PD
Sbjct: 304 GFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPD 363
Query: 393 VNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 214
VNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY
Sbjct: 364 VNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 423
Query: 213 A 211
A
Sbjct: 424 A 424
>sp|O23894|PRSA_BRACM 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 1) (TBP-1) gi|2564337|dbj|BAA22951.1| Tat
binding protein 1 [Brassica rapa]
Length = 424
Score = 237 bits (604), Expect = 9e-62
Identities = 119/121 (98%), Positives = 121/121 (99%)
Frame = -2
Query: 573 GFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPD 394
GFSSD+RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNV+PD
Sbjct: 304 GFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPD 363
Query: 393 VNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 214
VNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY
Sbjct: 364 VNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 423
Query: 213 A 211
A
Sbjct: 424 A 424
>dbj|BAB21595.1| Tat binding protein like protein [Brassica rapa]
Length = 424
Score = 237 bits (604), Expect = 9e-62
Identities = 119/121 (98%), Positives = 121/121 (99%)
Frame = -2
Query: 573 GFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPD 394
GFSSD+RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNV+PD
Sbjct: 304 GFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPD 363
Query: 393 VNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 214
VNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY
Sbjct: 364 VNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 423
Query: 213 A 211
A
Sbjct: 424 A 424
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,016,643
Number of Sequences: 1393205
Number of extensions: 8732902
Number of successful extensions: 26157
Number of sequences better than 10.0: 1035
Number of HSP's better than 10.0 without gapping: 24984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25989
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
