Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015986A_C01 KMC015986A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF24059.1|AF114385_1 putative protease SppA [Arabidopsis tha... 129 3e-29
pir||F96767 proteinase IV F2P9.14 [imported] - Arabidopsis thali... 129 3e-29
ref|NP_565077.1| SppA protease IV (SppA); protein id: At1g73990.... 129 3e-29
ref|NP_040183.1| transactivator [Human herpesvirus 3] gi|124139|... 32 4.3
gb|AAO25538.1| H [SEN virus] 32 5.6
>gb|AAF24059.1|AF114385_1 putative protease SppA [Arabidopsis thaliana]
Length = 680
Score = 129 bits (324), Expect = 3e-29
Identities = 67/101 (66%), Positives = 80/101 (78%)
Frame = -3
Query: 568 VDALGGLSRAIAIAKLKANIPQDSQVTVVEISRTSPSLPGILLGVGSSLVGVDRTLKELL 389
+DA+GGLSRAIAIAK KANIP + +VT+VE+SR S SLP IL G+GSS++GVDRTLK LL
Sbjct: 579 IDAVGGLSRAIAIAKQKANIPLNKKVTLVELSRPSTSLPDILSGIGSSVIGVDRTLKGLL 638
Query: 388 QGLTFSDGVQARMDGIMFQTLEGSPYTNPIFSIIKDYLSSL 266
LT ++GVQARMDGIMFQ L PI ++KDYLSSL
Sbjct: 639 DELTITEGVQARMDGIMFQQLGRDSLATPIIDMLKDYLSSL 679
>pir||F96767 proteinase IV F2P9.14 [imported] - Arabidopsis thaliana
gi|12325146|gb|AAG52522.1|AC016662_16 putative protease
IV; 48713-44371 [Arabidopsis thaliana]
Length = 677
Score = 129 bits (324), Expect = 3e-29
Identities = 67/101 (66%), Positives = 80/101 (78%)
Frame = -3
Query: 568 VDALGGLSRAIAIAKLKANIPQDSQVTVVEISRTSPSLPGILLGVGSSLVGVDRTLKELL 389
+DA+GGLSRAIAIAK KANIP + +VT+VE+SR S SLP IL G+GSS++GVDRTLK LL
Sbjct: 576 IDAVGGLSRAIAIAKQKANIPLNKKVTLVELSRPSTSLPDILSGIGSSVIGVDRTLKGLL 635
Query: 388 QGLTFSDGVQARMDGIMFQTLEGSPYTNPIFSIIKDYLSSL 266
LT ++GVQARMDGIMFQ L PI ++KDYLSSL
Sbjct: 636 DELTITEGVQARMDGIMFQQLGRDSLATPIIDMLKDYLSSL 676
>ref|NP_565077.1| SppA protease IV (SppA); protein id: At1g73990.1, supported by
cDNA: gi_6690269 [Arabidopsis thaliana]
gi|23306358|gb|AAN17406.1| Unknown protein [Arabidopsis
thaliana] gi|28058917|gb|AAO29968.1| Unknown protein
[Arabidopsis thaliana]
Length = 388
Score = 129 bits (324), Expect = 3e-29
Identities = 67/101 (66%), Positives = 80/101 (78%)
Frame = -3
Query: 568 VDALGGLSRAIAIAKLKANIPQDSQVTVVEISRTSPSLPGILLGVGSSLVGVDRTLKELL 389
+DA+GGLSRAIAIAK KANIP + +VT+VE+SR S SLP IL G+GSS++GVDRTLK LL
Sbjct: 287 IDAVGGLSRAIAIAKQKANIPLNKKVTLVELSRPSTSLPDILSGIGSSVIGVDRTLKGLL 346
Query: 388 QGLTFSDGVQARMDGIMFQTLEGSPYTNPIFSIIKDYLSSL 266
LT ++GVQARMDGIMFQ L PI ++KDYLSSL
Sbjct: 347 DELTITEGVQARMDGIMFQQLGRDSLATPIIDMLKDYLSSL 387
>ref|NP_040183.1| transactivator [Human herpesvirus 3] gi|124139|sp|P09309|ICP0_VZVD
Trans-acting transcriptional protein ICP0
gi|73901|pir||WZBE61 gene 61 protein - human herpesvirus
3 gi|60050|emb|CAA27944.1| ORF 61 (AA1-467) [Human
herpesvirus 3] gi|7385034|gb|AAF61662.1|AF206304_13
ORF61 [Human herpesvirus 3] gi|10697356|gb|AAG21700.1|
ORF61 [Human herpesvirus 3 MSP]
gi|13345210|gb|AAK19258.1|AF314221_13 ORF61 [Human
herpesvirus 3 VZV-32] gi|228664|prf||1808271A gene 61
protein
Length = 467
Score = 32.3 bits (72), Expect = 4.3
Identities = 15/37 (40%), Positives = 23/37 (61%)
Frame = +2
Query: 236 KMIVMNYKQLQ*TKVIFYYGKNGIGVRTSFQCLKHDS 346
KM+++NY I YG++ G++TS +CL HDS
Sbjct: 276 KMLILNY--------IGIYGRDEAGLKTSLRCLLHDS 304
>gb|AAO25538.1| H [SEN virus]
Length = 755
Score = 32.0 bits (71), Expect = 5.6
Identities = 12/28 (42%), Positives = 17/28 (59%)
Frame = -2
Query: 374 FRWSSSPNGWNHVSDIGRKSLHQSHFFH 291
FRW +S G NH++D K HQ + +H
Sbjct: 382 FRWLTSYTGTNHINDTFAKGKHQEYEYH 409
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,008,671
Number of Sequences: 1393205
Number of extensions: 10917600
Number of successful extensions: 26045
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 25336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26029
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
