Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015967A_C01 KMC015967A_c01
(482 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T12197 immunophilin - fava bean gi|2104959|gb|AAB57848.1| i... 191 5e-48
ref|NP_201240.1| FKBP-type peptidyl-prolyl cis-trans isomerase, ... 181 5e-45
gb|AAM60880.1| immunophilin [Arabidopsis thaliana] 180 6e-45
gb|AAF16717.1|AF117595_1 FK506-binding protein [Manduca sexta] 90 1e-17
gb|AAD16171.1| macrolide-binding protein FKBP12 [Cryptococcus ne... 90 1e-17
>pir||T12197 immunophilin - fava bean gi|2104959|gb|AAB57848.1| immunophilin
[Vicia faba]
Length = 112
Score = 191 bits (484), Expect = 5e-48
Identities = 87/94 (92%), Positives = 91/94 (96%)
Frame = -2
Query: 478 GQNVTVHCTGFGKNGDLSQQFWSTKDPGQKPFTFKIGQGSVIKGWDEGVLGMQVGEVARL 299
GQNVTVHCTG+GKNGDLSQ+FWSTKDPGQ PFTFKIGQGSVIKGWDEGVLGMQ+GEVARL
Sbjct: 19 GQNVTVHCTGYGKNGDLSQKFWSTKDPGQNPFTFKIGQGSVIKGWDEGVLGMQLGEVARL 78
Query: 298 RCSPDYAYGAGGFPAWGKQPNSVLDFEIEVLNAQ 197
RCSPDYAYGAGGFPAWG QPNSVL+FEIEVL AQ
Sbjct: 79 RCSPDYAYGAGGFPAWGIQPNSVLEFEIEVLRAQ 112
>ref|NP_201240.1| FKBP-type peptidyl-prolyl cis-trans isomerase, putative; protein
id: At5g64350.1, supported by cDNA: 10243., supported by
cDNA: gi_16649116, supported by cDNA: gi_20148470
[Arabidopsis thaliana] gi|2104957|gb|AAB57847.1|
immunophilin [Arabidopsis thaliana]
gi|16649117|gb|AAL24410.1| immunophilin [Arabidopsis
thaliana] gi|20148471|gb|AAM10126.1| immunophilin
[Arabidopsis thaliana]
Length = 112
Score = 181 bits (458), Expect = 5e-45
Identities = 81/95 (85%), Positives = 90/95 (94%)
Frame = -2
Query: 481 PGQNVTVHCTGFGKNGDLSQQFWSTKDPGQKPFTFKIGQGSVIKGWDEGVLGMQVGEVAR 302
PGQ VTVHCTGFGK+GDLSQ+FWSTKD GQKPF+F+IG+G+VIKGWDEGV+GMQ+GEVAR
Sbjct: 18 PGQTVTVHCTGFGKDGDLSQKFWSTKDEGQKPFSFQIGKGAVIKGWDEGVIGMQIGEVAR 77
Query: 301 LRCSPDYAYGAGGFPAWGKQPNSVLDFEIEVLNAQ 197
LRCS DYAYGAGGFPAWG QPNSVLDFEIEVL+ Q
Sbjct: 78 LRCSSDYAYGAGGFPAWGIQPNSVLDFEIEVLSVQ 112
>gb|AAM60880.1| immunophilin [Arabidopsis thaliana]
Length = 112
Score = 180 bits (457), Expect = 6e-45
Identities = 81/95 (85%), Positives = 90/95 (94%)
Frame = -2
Query: 481 PGQNVTVHCTGFGKNGDLSQQFWSTKDPGQKPFTFKIGQGSVIKGWDEGVLGMQVGEVAR 302
PGQ VTVHCTGFGK+GDLSQ+FWSTKD GQKPF+F+IG+G+VIKGWDEGV+GMQ+GEVAR
Sbjct: 18 PGQTVTVHCTGFGKDGDLSQKFWSTKDEGQKPFSFQIGKGAVIKGWDEGVIGMQIGEVAR 77
Query: 301 LRCSPDYAYGAGGFPAWGKQPNSVLDFEIEVLNAQ 197
LRCS DYAYGAGGFPAWG QPNSVLDFEIEVL+ Q
Sbjct: 78 LRCSSDYAYGAGGFPAWGIQPNSVLDFEIEVLSLQ 112
>gb|AAF16717.1|AF117595_1 FK506-binding protein [Manduca sexta]
Length = 108
Score = 89.7 bits (221), Expect = 1e-17
Identities = 49/94 (52%), Positives = 63/94 (66%)
Frame = -2
Query: 478 GQNVTVHCTGFGKNGDLSQQFWSTKDPGQKPFTFKIGQGSVIKGWDEGVLGMQVGEVARL 299
GQ V VH TG +G ++F S++D G KPF F+IG+G VI+GWDEGV M VGE A+L
Sbjct: 20 GQTVVVHYTGTLTSG---KKFDSSRDRG-KPFKFRIGKGEVIRGWDEGVAKMSVGERAKL 75
Query: 298 RCSPDYAYGAGGFPAWGKQPNSVLDFEIEVLNAQ 197
C+PDYAYG G P PNS L F++E+L +
Sbjct: 76 TCTPDYAYGQQGHPG-VIPPNSTLIFDVELLRLE 108
>gb|AAD16171.1| macrolide-binding protein FKBP12 [Cryptococcus neoformans var.
neoformans] gi|4323039|gb|AAD16172.1| macrolide-binding
protein FKBP12 [Cryptococcus neoformans var. neoformans]
Length = 108
Score = 89.7 bits (221), Expect = 1e-17
Identities = 49/92 (53%), Positives = 61/92 (66%)
Frame = -2
Query: 481 PGQNVTVHCTGFGKNGDLSQQFWSTKDPGQKPFTFKIGQGSVIKGWDEGVLGMQVGEVAR 302
PG NVT+H G +G +F S++D G PF +IGQG VI+GWDEGV + VG+ A
Sbjct: 19 PGDNVTIHYVGTLLDGS---KFDSSRDRGT-PFVCRIGQGQVIRGWDEGVPQLSVGQKAN 74
Query: 301 LRCSPDYAYGAGGFPAWGKQPNSVLDFEIEVL 206
L C+PDYAYGA GFP PNS L FE+E+L
Sbjct: 75 LICTPDYAYGARGFPP-VIPPNSTLKFEVELL 105
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,525,717
Number of Sequences: 1393205
Number of extensions: 9191322
Number of successful extensions: 28841
Number of sequences better than 10.0: 617
Number of HSP's better than 10.0 without gapping: 27410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28640
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
