Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015847A_C01 KMC015847A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB89033.1| P0415C01.11 [Oryza sativa (japonica cultivar-gro... 74 1e-12
ref|NP_192721.1| putative protein; protein id: At4g09830.1, supp... 64 1e-09
gb|AAM62508.1| unknown [Arabidopsis thaliana] 64 1e-09
gb|EAA18343.1| chloroquine resistance marker protein, putative [... 37 0.18
gb|EAA07220.1| agCP10631 [Anopheles gambiae str. PEST] 37 0.18
>dbj|BAB89033.1| P0415C01.11 [Oryza sativa (japonica cultivar-group)]
Length = 200
Score = 74.3 bits (181), Expect = 1e-12
Identities = 49/115 (42%), Positives = 66/115 (56%), Gaps = 1/115 (0%)
Frame = -3
Query: 581 VYQNSQTTMPTNFGASIPSNAFGTTVVGQGMRAGQLDQQPKNSVFSNALSSPIRRSLQPY 402
V+Q+S N + ++G VG R DQ KN++FSNALSSP+RRSLQ Y
Sbjct: 97 VHQHSANPF-ANSSIQPSAGSYGQATVGFAPRPSISDQS-KNTIFSNALSSPVRRSLQSY 154
Query: 401 HMAQGSCPSSNLMSSGNGARNSEITYPNSQIRDTNSSNSSD-CMDMHAESPGHDF 240
H+ QG SGNG RN+E T Q R+TNS S+D MDM ++S G+++
Sbjct: 155 HLTQG---------SGNGGRNAE-TNSAGQNRETNSGGSNDTSMDMVSDSAGNEY 199
>ref|NP_192721.1| putative protein; protein id: At4g09830.1, supported by cDNA:
142381., supported by cDNA: gi_18377768, supported by
cDNA: gi_20259186 [Arabidopsis thaliana]
gi|7459449|pir||T04031 hypothetical protein F17A8.180 -
Arabidopsis thaliana gi|4538913|emb|CAB39650.1| putative
protein [Arabidopsis thaliana]
gi|7267679|emb|CAB78106.1| putative protein [Arabidopsis
thaliana] gi|18377769|gb|AAL67034.1| unknown protein
[Arabidopsis thaliana] gi|20259187|gb|AAM14309.1|
unknown protein [Arabidopsis thaliana]
Length = 191
Score = 63.9 bits (154), Expect = 1e-09
Identities = 45/103 (43%), Positives = 56/103 (53%), Gaps = 1/103 (0%)
Frame = -3
Query: 563 TTMPTNFGASIPSNAFGTTVVGQGMRAGQLDQQPKNSVFSNALSSPIRRSLQPYHMAQGS 384
TT T+F ++P +R+ Q + Q KNSVFSNALSSPIRRSLQ Y + QG
Sbjct: 112 TTSGTSFPTAVPV-----------VRSEQCENQAKNSVFSNALSSPIRRSLQNYQIPQGG 160
Query: 383 CPSSNLMSSGNGARNSEITYPNSQIRDTNSSNSSD-CMDMHAE 258
+SG R+SE+ R +NS S D MDMHAE
Sbjct: 161 ------YTSGGTTRSSEVN------RGSNSPGSIDSSMDMHAE 191
>gb|AAM62508.1| unknown [Arabidopsis thaliana]
Length = 191
Score = 63.9 bits (154), Expect = 1e-09
Identities = 45/103 (43%), Positives = 56/103 (53%), Gaps = 1/103 (0%)
Frame = -3
Query: 563 TTMPTNFGASIPSNAFGTTVVGQGMRAGQLDQQPKNSVFSNALSSPIRRSLQPYHMAQGS 384
TT T+F ++P +R+ Q + Q KNSVFSNALSSPIRRSLQ Y + QG
Sbjct: 112 TTSGTSFPTAVPV-----------VRSEQCENQAKNSVFSNALSSPIRRSLQNYQIPQGG 160
Query: 383 CPSSNLMSSGNGARNSEITYPNSQIRDTNSSNSSD-CMDMHAE 258
+SG R+SE+ R +NS S D MDMHAE
Sbjct: 161 ------YTSGGTTRSSEVN------RGSNSPGSIDSSMDMHAE 191
>gb|EAA18343.1| chloroquine resistance marker protein, putative [Plasmodium yoelii
yoelii]
Length = 3604
Score = 37.0 bits (84), Expect = 0.18
Identities = 21/80 (26%), Positives = 37/80 (46%)
Frame = -3
Query: 518 FGTTVVGQGMRAGQLDQQPKNSVFSNALSSPIRRSLQPYHMAQGSCPSSNLMSSGNGARN 339
FG+T M +D KN V +N + +Q H + + P+ N ++ N N
Sbjct: 268 FGSTDTDANMFNSSIDNSDKNIVINNLNTDNSNDLIQHEHTEKSNSPNINDQTNVNEIDN 327
Query: 338 SEITYPNSQIRDTNSSNSSD 279
SE + + D+N+ N++D
Sbjct: 328 SENKNHDINVNDSNTENNTD 347
>gb|EAA07220.1| agCP10631 [Anopheles gambiae str. PEST]
Length = 504
Score = 37.0 bits (84), Expect = 0.18
Identities = 31/112 (27%), Positives = 51/112 (44%), Gaps = 1/112 (0%)
Frame = -3
Query: 575 QNSQTTMPTNFGASIPSNAFGTTVVGQGMRAGQLDQQPKNSVFSNALSSPIRRSLQPYHM 396
QN Q+ M T F + TT++G G G + P + + ++ P +M
Sbjct: 359 QNQQSVMNT-FTTQSTQQSTTTTMIGGGSSTGSIGGGP-------GVGPNVNGNMNPGNM 410
Query: 395 AQGSCPSSNLMSSGNGARNSEITYPNSQIRDTNSSNS-SDCMDMHAESPGHD 243
G PSS +S NG N+ NS ++N++NS S M+ + PG++
Sbjct: 411 LTGPGPSSAGPNSNNGGGNNN----NSGSNNSNNNNSGSGNMNNNGPGPGNN 458
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 520,845,828
Number of Sequences: 1393205
Number of extensions: 11404544
Number of successful extensions: 28983
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 27827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28937
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
