Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015794A_C01 KMC015794A_c01
(445 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188898.1| unknown protein; protein id: At3g22590.1, suppo... 139 6e-33
ref|NP_649863.1| CG11990-PA [Drosophila melanogaster] gi|7299132... 54 4e-07
gb|EAA14889.1| agCP4958 [Anopheles gambiae str. PEST] 53 7e-07
ref|NP_500465.2| Putative nuclear protein of eukaryotic origin [... 47 4e-05
ref|NP_666103.1| cDNA sequence, BC027756; hypothetical protein M... 47 7e-05
>ref|NP_188898.1| unknown protein; protein id: At3g22590.1, supported by cDNA:
gi_17529301 [Arabidopsis thaliana]
gi|11994291|dbj|BAB01474.1| gene_id:F16J14.15~unknown
protein [Arabidopsis thaliana]
gi|17529302|gb|AAL38878.1| unknown protein [Arabidopsis
thaliana] gi|23296828|gb|AAN13180.1| unknown protein
[Arabidopsis thaliana]
Length = 415
Score = 139 bits (351), Expect = 6e-33
Identities = 65/74 (87%), Positives = 72/74 (96%)
Frame = -1
Query: 445 QFKECPFKDHVEIFNKIMGFFIRFEDDSMESVKTVKQWNVKIISISKNKRHQDRAAALDV 266
QFK+ PFKDHVEIFNKI+GFF+RFEDDS+ES KTVKQWNVKIISISKNKRHQDRAAAL+V
Sbjct: 342 QFKDWPFKDHVEIFNKIIGFFLRFEDDSIESAKTVKQWNVKIISISKNKRHQDRAAALEV 401
Query: 265 WDRLEEFVRSRSHS 224
W++LEEFVRSRSHS
Sbjct: 402 WEKLEEFVRSRSHS 415
>ref|NP_649863.1| CG11990-PA [Drosophila melanogaster] gi|7299132|gb|AAF54331.1|
CG11990-PA [Drosophila melanogaster]
gi|16769708|gb|AAL29073.1| LD47989p [Drosophila
melanogaster]
Length = 538
Score = 53.9 bits (128), Expect = 4e-07
Identities = 25/69 (36%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Frame = -1
Query: 445 QFKECPFKDH-VEIFNKIMGFFIRFEDDSMESVKTVKQWNVKIISISKNKRHQDRAAALD 269
QFK P++ + V+IF+KI F + F + ++S V++W+V ++ +S+NKRH DRA
Sbjct: 463 QFKGWPWEGNPVDIFSKICAFHLCFSEMKLDS--NVERWSVTLLRLSQNKRHMDRAVLSK 520
Query: 268 VWDRLEEFV 242
W+ L++++
Sbjct: 521 FWETLDKYI 529
>gb|EAA14889.1| agCP4958 [Anopheles gambiae str. PEST]
Length = 543
Score = 53.1 bits (126), Expect = 7e-07
Identities = 25/69 (36%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Frame = -1
Query: 445 QFKECPFKDH-VEIFNKIMGFFIRFEDDSMESVKTVKQWNVKIISISKNKRHQDRAAALD 269
QFK P+ + VEIF+KI F +R++D +++ V +W V +++IS+ KRH D+A +
Sbjct: 468 QFKGWPWDGNPVEIFSKIAAFHLRYDDLKLDA--NVAKWAVTVLNISRTKRHLDKACLMA 525
Query: 268 VWDRLEEFV 242
W++L+ ++
Sbjct: 526 FWEKLDLYM 534
>ref|NP_500465.2| Putative nuclear protein of eukaryotic origin [Caenorhabditis
elegans] gi|16950402|gb|AAF39795.2| Hypothetical protein
F35F11.1 [Caenorhabditis elegans]
Length = 554
Score = 47.4 bits (111), Expect = 4e-05
Identities = 24/58 (41%), Positives = 31/58 (53%)
Frame = -1
Query: 412 EIFNKIMGFFIRFEDDSMESVKTVKQWNVKIISISKNKRHQDRAAALDVWDRLEEFVR 239
+IF I F + D + V V QWNV I +S KRH D+A VW+ +E FVR
Sbjct: 487 DIFTHIPAFHFHVDQD--KPVAQVMQWNVHKIPVSATKRHMDKARFSQVWETIENFVR 542
>ref|NP_666103.1| cDNA sequence, BC027756; hypothetical protein MGC36559 [Mus
musculus] gi|20379598|gb|AAH27756.1| cDNA sequence,
BC027756 [Mus musculus] gi|21411055|gb|AAH31127.1|
Unknown (protein for MGC:36559) [Mus musculus]
gi|26348817|dbj|BAC38048.1| unnamed protein product [Mus
musculus]
Length = 531
Score = 46.6 bits (109), Expect = 7e-05
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Frame = -1
Query: 445 QFKECPFK----DHVEIFNKIMGFFIRFEDDSMESVKTVKQWNVKIISISKNKRHQDRAA 278
QFK P+ V+IF KI F +++++ ++ V++W+V ++ +S +KRH DR
Sbjct: 453 QFKGWPWLLPDGSPVDIFAKIKAFHLKYDEVRLDP--NVQKWDVTVLELSYHKRHLDRPV 510
Query: 277 ALDVWDRLEEF-VRSRSH 227
L W+ L+ + V+ +SH
Sbjct: 511 FLRFWETLDRYMVKHKSH 528
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 347,913,734
Number of Sequences: 1393205
Number of extensions: 6351606
Number of successful extensions: 15971
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 15754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15967
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 6655800768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
