Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015740A_C01 KMC015740A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568342.1| expressed protein; protein id: At5g17170.1, sup... 216 1e-55
dbj|BAC57824.1| P0577B11.21 [Oryza sativa (japonica cultivar-gro... 202 2e-51
ref|NP_568749.1| expressed protein; protein id: At5g51010.1, sup... 65 7e-10
ref|ZP_00059719.1| hypothetical protein [Clostridium thermocellu... 48 7e-05
ref|NP_275298.1| rubredoxin [Methanothermobacter thermautotrophi... 42 0.005
>ref|NP_568342.1| expressed protein; protein id: At5g17170.1, supported by cDNA:
gi_14334891 [Arabidopsis thaliana]
gi|10177062|dbj|BAB10504.1| gene_id:MKP11.2~unknown
protein [Arabidopsis thaliana]
gi|14334892|gb|AAK59624.1| unknown protein [Arabidopsis
thaliana] gi|24030464|gb|AAN41384.1| unknown protein
[Arabidopsis thaliana]
Length = 271
Score = 216 bits (551), Expect = 1e-55
Identities = 101/117 (86%), Positives = 111/117 (94%)
Frame = -1
Query: 548 KPDSVYFVVSRGAEVDVKRLPKRPAPPRFGRKLTDAQKARATHICLDCGFIYTLQKPFEE 369
KPDSVYFVVSRGAEVDVK+L KRPAPPRFGRKLT+ QKARATHICLDCGFIYTL K F+E
Sbjct: 155 KPDSVYFVVSRGAEVDVKKLNKRPAPPRFGRKLTETQKARATHICLDCGFIYTLPKSFDE 214
Query: 368 QPESYICPQCQAPKKRFSPYDVNTGRAIGGGLPPIGVIIGLVAGLGAVGALLVYGLQ 198
QP++Y+CPQC APKKRF+ YDVNTG+AIGGGLPPIGVI+GL+AGLGAVGALLVYGLQ
Sbjct: 215 QPDTYVCPQCIAPKKRFAKYDVNTGKAIGGGLPPIGVIVGLLAGLGAVGALLVYGLQ 271
>dbj|BAC57824.1| P0577B11.21 [Oryza sativa (japonica cultivar-group)]
Length = 260
Score = 202 bits (515), Expect = 2e-51
Identities = 94/117 (80%), Positives = 103/117 (87%)
Frame = -1
Query: 548 KPDSVYFVVSRGAEVDVKRLPKRPAPPRFGRKLTDAQKARATHICLDCGFIYTLQKPFEE 369
KPDSVYFVVSRGA+VDVKRLPKRPAPPRFGRKLT++QKARATHICLDCG+IY L KPFEE
Sbjct: 144 KPDSVYFVVSRGAQVDVKRLPKRPAPPRFGRKLTESQKARATHICLDCGYIYFLPKPFEE 203
Query: 368 QPESYICPQCQAPKKRFSPYDVNTGRAIGGGLPPIGVIIGLVAGLGAVGALLVYGLQ 198
QP+ Y CPQC APKKRF+ YD TGRAIGG LPPI VI+ L+ G+ VGALLVYGLQ
Sbjct: 204 QPDEYGCPQCNAPKKRFAKYDAETGRAIGGALPPITVIVSLIIGIAGVGALLVYGLQ 260
>ref|NP_568749.1| expressed protein; protein id: At5g51010.1, supported by cDNA:
27885., supported by cDNA: gi_15292668, supported by
cDNA: gi_19310696 [Arabidopsis thaliana]
gi|9758248|dbj|BAB08747.1| gene_id:K3K7.19~unknown
protein [Arabidopsis thaliana]
gi|15292669|gb|AAK92703.1| unknown protein [Arabidopsis
thaliana] gi|19310697|gb|AAL85079.1| unknown protein
[Arabidopsis thaliana] gi|21555410|gb|AAM63852.1|
unknown [Arabidopsis thaliana]
Length = 154
Score = 64.7 bits (156), Expect = 7e-10
Identities = 39/116 (33%), Positives = 57/116 (48%), Gaps = 19/116 (16%)
Frame = -1
Query: 497 KRLPKRPAPPRFGRKLTDAQKARATHICLDCGFIYTLQKPFEEQPESYICPQCQAPKKRF 318
K+ + + PRF +++ Q +IC DCG+IY + PF++ P++Y CP C APK+RF
Sbjct: 43 KKSLSKSSAPRFSMRVSSKQ----AYICRDCGYIYNDRTPFDKLPDNYFCPVCAAPKRRF 98
Query: 317 SPY-----------DVNTGR--------AIGGGLPPIGVIIGLVAGLGAVGALLVY 207
Y DV R A+G LP IG+ G+ A+ AL Y
Sbjct: 99 RAYMPDVSKNVNDKDVRKARKAELQRDEAVGKALP-----IGIAVGVLALAALYFY 149
>ref|ZP_00059719.1| hypothetical protein [Clostridium thermocellum ATCC 27405]
Length = 220
Score = 48.1 bits (113), Expect = 7e-05
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = -1
Query: 440 QKARATHICLDCGFIYTLQKPFEEQPESYICPQCQAPKKRF 318
++ RA ++C CG+ YT PFE+ PE Y+CP C PK F
Sbjct: 176 KEKRAKYVCSICGYEYTGDIPFEDLPEDYVCPVCGQPKSVF 216
>ref|NP_275298.1| rubredoxin [Methanothermobacter thermautotrophicus]
gi|14285763|sp|O26258|RUBR_METTH Probable rubredoxin
(RD) gi|7430810|pir||G69073 rubredoxin -
Methanobacterium thermoautotrophicum (strain Delta H)
gi|2621197|gb|AAB84661.1| rubredoxin
[Methanothermobacter thermautotrophicus str. Delta H]
Length = 63
Score = 42.0 bits (97), Expect = 0.005
Identities = 20/48 (41%), Positives = 25/48 (51%), Gaps = 11/48 (22%)
Frame = -1
Query: 416 CLDCGFIYTLQK-----------PFEEQPESYICPQCQAPKKRFSPYD 306
C CG+IY +K PFE+ PE++ CP C A KK F P D
Sbjct: 16 CRVCGYIYDPEKGEPRTDTPPGTPFEDLPETWRCPSCGAKKKMFKPLD 63
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 440,717,474
Number of Sequences: 1393205
Number of extensions: 9238278
Number of successful extensions: 37158
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 33436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36958
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
