Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015738A_C01 KMC015738A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201178.1| ARI-like RING zinc finger protein-like; protein... 32 4.8
gb|EAA16554.1| hypothetical protein [Plasmodium yoelii yoelii] 32 6.2
ref|NP_047980.1| major ssDNA binding protein [Ateline herpesviru... 31 8.1
>ref|NP_201178.1| ARI-like RING zinc finger protein-like; protein id: At5g63730.1
[Arabidopsis thaliana] gi|10177054|dbj|BAB10466.1|
ARI-like RING zinc finger protein-like [Arabidopsis
thaliana] gi|29125042|emb|CAD52896.1| ARIADNE-like
protein ARI14 [Arabidopsis thaliana]
Length = 506
Score = 32.0 bits (71), Expect = 4.8
Identities = 20/65 (30%), Positives = 30/65 (45%), Gaps = 10/65 (15%)
Frame = -3
Query: 433 RPLDCCRVVSILC*GSCRIADEFFCRYHSWTSEIRTKH----LQSLTK------CWCKLH 284
RP+ C + LC + +I+DE F Y + T + H L+S TK C C+L
Sbjct: 223 RPVSCNKASDWLCSATMKISDESFSLYPTKTKTVTCPHCLCSLESDTKMPQFLTCVCRLR 282
Query: 283 LLNYC 269
+ C
Sbjct: 283 FCSRC 287
>gb|EAA16554.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 327
Score = 31.6 bits (70), Expect = 6.2
Identities = 20/85 (23%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = +1
Query: 157 SSNTDMISQQYAIYTKAQINDNEFC-*ACSLCISFTSSSNSSTNA--IYTSILSKTASVL 327
S N+ +I + Y YTK + +N++C A I+F +N++T + S LS ++
Sbjct: 84 SGNSKIIYENYISYTKNNLTENDYCTNAYDKLINFIKDNNNNTKTYEMVESTLSSALAIA 143
Query: 328 F*FLKSMNDIYKRTHQQ-FGMNLNK 399
+ + ++Y+ + + F ++++K
Sbjct: 144 LCYNNRICNLYENINSRIFLLDISK 168
>ref|NP_047980.1| major ssDNA binding protein [Ateline herpesvirus 3]
gi|11278305|pir||T42922 major single-stranded DNA
binding protein - ateline herpesvirus 3 (strain 73)
gi|4019233|gb|AAC95531.1| major ssDNA binding protein
[Ateline herpesvirus 3]
Length = 1128
Score = 31.2 bits (69), Expect = 8.1
Identities = 20/58 (34%), Positives = 29/58 (49%), Gaps = 1/58 (1%)
Frame = +2
Query: 164 IQT*FPSNMRSIQKHKSMTMNSVRHAAYAFHSQAVAIVQQMQFTPAFC-QRLQVFCSD 334
++ F N++++ K MT SVR +AY H +A+ FTP F L CSD
Sbjct: 61 VEANFSFNVKAVHKKIDMTTLSVRVSAY--HREAIVFFNTNFFTPIFFGPGLDSLCSD 116
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 430,617,915
Number of Sequences: 1393205
Number of extensions: 8677643
Number of successful extensions: 15840
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15839
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
