Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015706A_C01 KMC015706A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564476.1| hypothetical protein; protein id: At1g36940.1 [... 53 2e-06
ref|NP_728505.1| Enhancer of bithorax CG32346-PB gi|23092680|gb|... 39 0.043
gb|AAK93200.1| LD30146p [Drosophila melanogaster] 39 0.043
gb|AAL16644.1|AF417921_1 nucleosome remodeling factor large subu... 39 0.043
ref|NP_728507.1| Enhancer of bithorax CG32346-PA gi|23092682|gb|... 39 0.043
>ref|NP_564476.1| hypothetical protein; protein id: At1g36940.1 [Arabidopsis
thaliana] gi|25373091|pir||E86488 protein T32E20.35
[imported] - Arabidopsis thaliana
gi|8778786|gb|AAF79794.1|AC020646_17 T32E20.35
[Arabidopsis thaliana]
gi|12321716|gb|AAG50899.1|AC068901_8 hypothetical
protein [Arabidopsis thaliana]
Length = 181
Score = 53.1 bits (126), Expect = 2e-06
Identities = 32/98 (32%), Positives = 48/98 (48%)
Frame = -2
Query: 555 NLIISTPKTTTAVPNSNINRCRTRQQQLAAGNNSAGVPKHKRCDQNQNQNLVGISIEEMD 376
NL S P TTT + +R R R+++ N+ + I + E+D
Sbjct: 94 NLSFSAPTTTT----TRTSRGRIRKEEFG------------------NKKIDVIDVAELD 131
Query: 375 PPLPVIKKVPNLEEGSKVENSLWKRRNNGPAIKGLQLQ 262
PPLPV+KK + G K +LWKRR+ G ++ LQ+Q
Sbjct: 132 PPLPVVKKTHDGGAGDKAAENLWKRRSGGCQLRSLQIQ 169
>ref|NP_728505.1| Enhancer of bithorax CG32346-PB gi|23092680|gb|AAF47361.2| CG32346-PB
[Drosophila melanogaster]
Length = 2649
Score = 38.9 bits (89), Expect = 0.043
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Frame = -2
Query: 555 NLIISTPKTTTAVPNSNINRCRTRQQQLAAGNNSAGVPKHKRCDQNQNQNL-VGISIEEM 379
N I T + TAVP +N +QQ L + V + ++ Q N G++
Sbjct: 1955 NAHIVTSNSATAVPQANPQTSPVKQQALPPQSPQQVVVQQQQIHQQSPTNFESGVTPITQ 2014
Query: 378 DPPLPVIKKVPNLEEGSKVENSLWKRRNNGPAIKGLQ---LQQIHHPRICLQ 232
P L + P ++ VE SL + + G IK + LQ H PRI LQ
Sbjct: 2015 QPVLTQAVQAPAQQQALSVEESLLQNQPPGTVIKCVTAQVLQTEHGPRIVLQ 2066
>gb|AAK93200.1| LD30146p [Drosophila melanogaster]
Length = 1022
Score = 38.9 bits (89), Expect = 0.043
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Frame = -2
Query: 555 NLIISTPKTTTAVPNSNINRCRTRQQQLAAGNNSAGVPKHKRCDQNQNQNL-VGISIEEM 379
N I T + TAVP +N +QQ L + V + ++ Q N G++
Sbjct: 838 NAHIVTSNSATAVPQANPQTSPVKQQALPPQSPQQVVVQQQQIHQQSPTNFESGVTPITQ 897
Query: 378 DPPLPVIKKVPNLEEGSKVENSLWKRRNNGPAIKGLQ---LQQIHHPRICLQ 232
P L + P ++ VE SL + + G IK + LQ H PRI LQ
Sbjct: 898 QPVLTQAVQAPAQQQALSVEESLLQNQPPGTVIKCVTAQVLQTEHGPRIVLQ 949
>gb|AAL16644.1|AF417921_1 nucleosome remodeling factor large subunit NURF301 [Drosophila
melanogaster]
Length = 2669
Score = 38.9 bits (89), Expect = 0.043
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Frame = -2
Query: 555 NLIISTPKTTTAVPNSNINRCRTRQQQLAAGNNSAGVPKHKRCDQNQNQNL-VGISIEEM 379
N I T + TAVP +N +QQ L + V + ++ Q N G++
Sbjct: 1975 NAHIVTSNSATAVPQANPQTSPVKQQALPPQSPQQVVVQQQQIHQQSPTNFESGVTPITQ 2034
Query: 378 DPPLPVIKKVPNLEEGSKVENSLWKRRNNGPAIKGLQ---LQQIHHPRICLQ 232
P L + P ++ VE SL + + G IK + LQ H PRI LQ
Sbjct: 2035 QPVLTQAVQAPAQQQALSVEESLLQNQPPGTVIKCVTAQVLQTEHGPRIVLQ 2086
>ref|NP_728507.1| Enhancer of bithorax CG32346-PA gi|23092682|gb|AAN11431.1| CG32346-PA
[Drosophila melanogaster]
Length = 2669
Score = 38.9 bits (89), Expect = 0.043
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Frame = -2
Query: 555 NLIISTPKTTTAVPNSNINRCRTRQQQLAAGNNSAGVPKHKRCDQNQNQNL-VGISIEEM 379
N I T + TAVP +N +QQ L + V + ++ Q N G++
Sbjct: 1975 NAHIVTSNSATAVPQANPQTSPVKQQALPPQSPQQVVVQQQQIHQQSPTNFESGVTPITQ 2034
Query: 378 DPPLPVIKKVPNLEEGSKVENSLWKRRNNGPAIKGLQ---LQQIHHPRICLQ 232
P L + P ++ VE SL + + G IK + LQ H PRI LQ
Sbjct: 2035 QPVLTQAVQAPAQQQALSVEESLLQNQPPGTVIKCVTAQVLQTEHGPRIVLQ 2086
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 499,638,861
Number of Sequences: 1393205
Number of extensions: 11492410
Number of successful extensions: 34351
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 33049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34264
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
