Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015697A_C01 KMC015697A_c01
(503 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191625.1| putative protein; protein id: At3g60660.1 [Arab... 98 6e-20
dbj|BAC15517.1| hypothetical protein~similar to Arabidopsis thal... 57 9e-08
ref|XP_214527.1| similar to RIKEN cDNA 2810433K01 gene [Mus musc... 39 0.033
gb|AAH19940.1| RIKEN cDNA 2810433K01 gene [Mus musculus] 37 0.17
dbj|BAB24591.1| unnamed protein product [Mus musculus] gi|128620... 37 0.17
>ref|NP_191625.1| putative protein; protein id: At3g60660.1 [Arabidopsis thaliana]
gi|11283523|pir||T47877 hypothetical protein T4C21.70 -
Arabidopsis thaliana gi|7329676|emb|CAB82670.1| putative
protein [Arabidopsis thaliana]
gi|26450283|dbj|BAC42258.1| unknown protein [Arabidopsis
thaliana] gi|28827580|gb|AAO50634.1| unknown protein
[Arabidopsis thaliana]
Length = 272
Score = 97.8 bits (242), Expect = 6e-20
Identities = 45/55 (81%), Positives = 51/55 (91%)
Frame = -1
Query: 494 EGIKGKHFFLEVDIKGPSLKLDNTGKAILTVLRHLGRINETRVGHHRVIILPKPH 330
+ +KGKHFFLE D+KGPSLKLDNTGKAILTVLRHLGRI+ETR+G +RVIIL KPH
Sbjct: 218 QAVKGKHFFLETDMKGPSLKLDNTGKAILTVLRHLGRISETRIGQNRVIILMKPH 272
>dbj|BAC15517.1| hypothetical protein~similar to Arabidopsis thaliana chromosome 3
At3g60660 [Oryza sativa (japonica cultivar-group)]
gi|22831339|dbj|BAC16184.1| hypothetical protein~similar
to Arabidopsis thaliana chromosome 3 At3g60660 [Oryza
sativa (japonica cultivar-group)]
Length = 269
Score = 57.4 bits (137), Expect = 9e-08
Identities = 26/34 (76%), Positives = 28/34 (81%)
Frame = -1
Query: 503 AGMEGIKGKHFFLEVDIKGPSLKLDNTGKAILTV 402
A E +KG+HFFLE DIKGP LKLD TGKAILTV
Sbjct: 217 AARESVKGRHFFLETDIKGPGLKLDTTGKAILTV 250
>ref|XP_214527.1| similar to RIKEN cDNA 2810433K01 gene [Mus musculus] [Rattus
norvegicus]
Length = 254
Score = 38.9 bits (89), Expect = 0.033
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = -1
Query: 485 KGKHFFLEVDIKG-PSLKLDNTGKAILTVLRHLGRINETRVG 363
KG+HF +E DIK +LK+D I+ +LRH R++E R G
Sbjct: 205 KGRHFIVEADIKEFTTLKVDKKFHVIMNILRHCQRLSEVRGG 246
>gb|AAH19940.1| RIKEN cDNA 2810433K01 gene [Mus musculus]
Length = 254
Score = 36.6 bits (83), Expect = 0.17
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -1
Query: 485 KGKHFFLEVDIKG-PSLKLDNTGKAILTVLRHLGRINETRVG 363
KG HF +E DIK +LK+D I+ +LRH R++E R G
Sbjct: 205 KGHHFIVEADIKEFTALKVDKRFYVIMHILRHCHRLSEVRGG 246
>dbj|BAB24591.1| unnamed protein product [Mus musculus] gi|12862045|dbj|BAB32336.1|
unnamed protein product [Mus musculus]
Length = 254
Score = 36.6 bits (83), Expect = 0.17
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -1
Query: 485 KGKHFFLEVDIKG-PSLKLDNTGKAILTVLRHLGRINETRVG 363
KG HF +E DIK +LK+D I+ +LRH R++E R G
Sbjct: 205 KGHHFIVEADIKEFTALKVDKRFYVIMHILRHCHRLSEVRGG 246
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 397,090,048
Number of Sequences: 1393205
Number of extensions: 7488758
Number of successful extensions: 14295
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 14037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14291
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
