Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015692A_C01 KMC015692A_c01
(524 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM78088.1| AT3g01820/F28J7_15 [Arabidopsis thaliana] gi|2330... 39 0.037
gb|AAM88906.1| nucleoside diphosphate kinase [Branchiostoma lanc... 33 2.0
>gb|AAM78088.1| AT3g01820/F28J7_15 [Arabidopsis thaliana]
gi|23308271|gb|AAN18105.1| At3g01820/F28J7_15
[Arabidopsis thaliana]
Length = 263
Score = 38.9 bits (89), Expect = 0.037
Identities = 21/32 (65%), Positives = 25/32 (77%), Gaps = 1/32 (3%)
Frame = -2
Query: 523 VAGAPG-ETWQGLLTALHLKHINALSSSQKLT 431
V GA +TWQGLL ALHLK +N L++SQKLT
Sbjct: 232 VGGATSADTWQGLLAALHLKQVN-LTTSQKLT 262
>gb|AAM88906.1| nucleoside diphosphate kinase [Branchiostoma lanceolatum]
Length = 118
Score = 33.1 bits (74), Expect = 2.0
Identities = 21/52 (40%), Positives = 26/52 (49%)
Frame = +2
Query: 74 KPNKKYLEFLKFYNTICLYLKANIKCPSLGLGPGKVYQKRQMGDTT*TKKDL 229
K + K LE LKFY T+C Y+ +N P + G G V R M T K L
Sbjct: 35 KTHYKDLEKLKFYPTLCKYMSSNPVVPMVWEGLGAVKTGRVMLGETDPAKSL 86
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 439,881,777
Number of Sequences: 1393205
Number of extensions: 9042895
Number of successful extensions: 19073
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19073
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
