Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015674A_C01 KMC015674A_c01
(424 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566324.1| expressed protein; protein id: At3g07910.1, sup... 124 2e-28
ref|NP_648757.1| CG6878-PA [Drosophila melanogaster] gi|7294305|... 49 1e-05
ref|NP_080222.1| RIKEN cDNA 2010100O12 [Mus musculus] gi|1815278... 49 2e-05
ref|NP_705421.1| hypothetical protein [Plasmodium falciparum 3D7... 44 6e-04
gb|EAA21791.1| hypothetical protein [Plasmodium yoelii yoelii] 41 0.003
>ref|NP_566324.1| expressed protein; protein id: At3g07910.1, supported by cDNA:
24905., supported by cDNA: gi_15724352, supported by
cDNA: gi_16974540 [Arabidopsis thaliana]
gi|6648203|gb|AAF21201.1|AC013483_25 unknown protein
[Arabidopsis thaliana]
gi|15724353|gb|AAL06569.1|AF412117_1 AT3g07910/F17A17_25
[Arabidopsis thaliana] gi|16974541|gb|AAL31180.1|
AT3g07910/F17A17_25 [Arabidopsis thaliana]
gi|21592511|gb|AAM64461.1| unknown [Arabidopsis
thaliana]
Length = 74
Score = 124 bits (312), Expect = 2e-28
Identities = 59/74 (79%), Positives = 65/74 (87%)
Frame = -3
Query: 389 MARNSCLTRIAAGAAIGGAVGGAVGAVYGTYEAIKYKVPGFLKIRHIGQTTLGSAAIFGL 210
MA+NSCL +I AG A+GGA+GGAVGAVYGTYEAI+ KVPG K+R IGQTTL SAAIFGL
Sbjct: 1 MAKNSCLAKITAGVAVGGALGGAVGAVYGTYEAIRVKVPGLHKVRFIGQTTLSSAAIFGL 60
Query: 209 FLGAGSLIHCGKSY 168
FLGAGSLIHCGK Y
Sbjct: 61 FLGAGSLIHCGKGY 74
>ref|NP_648757.1| CG6878-PA [Drosophila melanogaster] gi|7294305|gb|AAF49654.1|
CG6878-PA [Drosophila melanogaster]
gi|17944580|gb|AAL48177.1| RH56103p [Drosophila
melanogaster]
Length = 79
Score = 48.9 bits (115), Expect = 1e-05
Identities = 23/66 (34%), Positives = 37/66 (55%)
Frame = -3
Query: 377 SCLTRIAAGAAIGGAVGGAVGAVYGTYEAIKYKVPGFLKIRHIGQTTLGSAAIFGLFLGA 198
+C ++ G IG VG A GAV+G + A++Y + G I ++G+T + FG F+
Sbjct: 14 TCFDKMKTGFIIGFCVGMASGAVFGGFSALRYGLRGRELINNVGKTMVQGGGTFGTFMAI 73
Query: 197 GSLIHC 180
G+ I C
Sbjct: 74 GTGIRC 79
>ref|NP_080222.1| RIKEN cDNA 2010100O12 [Mus musculus] gi|18152785|ref|NP_542786.1|
chromosome 20 open reading frame 52; homolog of mouse
RIKEN 2010100O12 gene [Homo sapiens]
gi|24211601|sp|Q9H1N2|CT52_HUMAN Protein C20orf52
gi|10635691|emb|CAC11117.1| bA353C18.2 (novel protein)
[Homo sapiens] gi|12834186|dbj|BAB22816.1| unnamed
protein product [Mus musculus]
gi|12842399|dbj|BAB25585.1| unnamed protein product [Mus
musculus] gi|13378325|gb|AAK18748.1| L52 [Mus musculus]
gi|14250142|gb|AAH08488.1| chromosome 20 open reading
frame 52 [Homo sapiens] gi|20380274|gb|AAH28749.1| RIKEN
cDNA 2010100O12 gene [Mus musculus]
Length = 79
Score = 48.5 bits (114), Expect = 2e-05
Identities = 24/66 (36%), Positives = 36/66 (54%)
Frame = -3
Query: 377 SCLTRIAAGAAIGGAVGGAVGAVYGTYEAIKYKVPGFLKIRHIGQTTLGSAAIFGLFLGA 198
SC R+ G +G AVG A GA++GT+ ++ + G + IG+T + S FG F+
Sbjct: 14 SCFDRVKMGFVMGCAVGMAAGALFGTFSCLRIGMRGRELMGGIGKTMMQSGGTFGTFMAI 73
Query: 197 GSLIHC 180
G I C
Sbjct: 74 GMGIRC 79
>ref|NP_705421.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615666|emb|CAD52658.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 168
Score = 43.5 bits (101), Expect = 6e-04
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = -3
Query: 407 SNLEIPMARNSCLTRIAAGAAIGGAVGGAVGAVYGTYEAIKYKVPGFLKIRHIGQTTLGS 228
S++ + +C I G +G VGG G++ G Y + +K L + + LG
Sbjct: 98 SDVNLSHRTRACFESIKMGVKMGTMVGGIFGSLTGIYASFAHKNLFILPV-----SVLGG 152
Query: 227 AAIFGLFLGAGSLIHC 180
A FG FLG G ++ C
Sbjct: 153 AVSFGFFLGCGMIVRC 168
>gb|EAA21791.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 72
Score = 41.2 bits (95), Expect = 0.003
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -3
Query: 377 SCLTRIAAGAAIGGAVGGAVGAVYGTYEAIKYKVPGFLKIRHIGQTTLGSAAIFGLFLGA 198
+CL + G +G VGG G++ G Y + +K + + +G A FG FLG
Sbjct: 12 ACLESVKMGVKMGTMVGGIFGSLTGLYASFAHKNLFIFPV-----SVIGGAVSFGFFLGC 66
Query: 197 GSLIHC 180
G ++ C
Sbjct: 67 GMIVRC 72
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 396,307,906
Number of Sequences: 1393205
Number of extensions: 8671973
Number of successful extensions: 45685
Number of sequences better than 10.0: 158
Number of HSP's better than 10.0 without gapping: 37685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44708
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 6889859208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
