Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015668A_C01 KMC015668A_c01
(803 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S60184 photosystem I protein A2 - garden snapdragon chlorop... 244 8e-64
ref|NP_054932.1| photosystem I P700 apoprotein A2 [Spinacia oler... 244 8e-64
sp|Q33332|PSAB_ANTMA Photosystem I P700 chlorophyll A apoprotein... 244 8e-64
ref|NP_039382.1| photosystem I P700 apoprotein A2 [Oryza sativa ... 244 8e-64
ref|NP_114258.1| photosystem I P700 apoprotein A2 [Triticum aest... 244 8e-64
>pir||S60184 photosystem I protein A2 - garden snapdragon chloroplast
Length = 734
Score = 244 bits (624), Expect = 8e-64
Identities = 117/119 (98%), Positives = 117/119 (98%)
Frame = -3
Query: 801 LMGXLRDYLCLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELI 622
LMG LRDYL LNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELI
Sbjct: 616 LMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELI 675
Query: 621 ETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 445
ETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct: 676 ETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
>ref|NP_054932.1| photosystem I P700 apoprotein A2 [Spinacia oleracea]
gi|131150|sp|P06512|PSAB_SPIOL Photosystem I P700
chlorophyll A apoprotein A2 (PsaB) (PSI-B)
gi|81515|pir||S00445 photosystem I protein A2 - spinach
chloroplast gi|7636105|emb|CAB88725.1| PSI P700
apoprotein A2 [Spinacia oleracea]
gi|225422|prf||1303218B gene psaB
Length = 734
Score = 244 bits (624), Expect = 8e-64
Identities = 117/119 (98%), Positives = 117/119 (98%)
Frame = -3
Query: 801 LMGXLRDYLCLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELI 622
LMG LRDYL LNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELI
Sbjct: 616 LMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELI 675
Query: 621 ETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 445
ETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct: 676 ETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
>sp|Q33332|PSAB_ANTMA Photosystem I P700 chlorophyll A apoprotein A2 (PsaB) (PSI-B)
gi|669096|emb|CAA58958.1| photosystem I subunit
[Antirrhinum majus]
Length = 734
Score = 244 bits (624), Expect = 8e-64
Identities = 117/119 (98%), Positives = 117/119 (98%)
Frame = -3
Query: 801 LMGXLRDYLCLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELI 622
LMG LRDYL LNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELI
Sbjct: 616 LMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELI 675
Query: 621 ETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 445
ETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct: 676 ETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
>ref|NP_039382.1| photosystem I P700 apoprotein A2 [Oryza sativa (japonica
cultivar-group)] gi|131148|sp|P12156|PSAB_ORYSA
Photosystem I P700 chlorophyll A apoprotein A2 (PsaB)
(PSI-B) gi|72674|pir||A2RZP7 photosystem I P700
apoprotein A2 - rice chloroplast
gi|11981|emb|CAA33995.1| PSI P700 apoprotein A2 [Oryza
sativa (japonica cultivar-group)]
gi|226604|prf||1603356AA photosystem I P700 apoprotein
A2
Length = 734
Score = 244 bits (624), Expect = 8e-64
Identities = 117/119 (98%), Positives = 117/119 (98%)
Frame = -3
Query: 801 LMGXLRDYLCLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELI 622
LMG LRDYL LNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELI
Sbjct: 616 LMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELI 675
Query: 621 ETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 445
ETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct: 676 ETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
>ref|NP_114258.1| photosystem I P700 apoprotein A2 [Triticum aestivum]
gi|17368263|sp|P58386|PSAB_WHEAT Photosystem I P700
chlorophyll A apoprotein A2 (PsaB) (PSI-B)
gi|13928204|dbj|BAB47033.1| PSI p700 apoprotein A2
[Triticum aestivum]
Length = 734
Score = 244 bits (624), Expect = 8e-64
Identities = 117/119 (98%), Positives = 117/119 (98%)
Frame = -3
Query: 801 LMGXLRDYLCLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELI 622
LMG LRDYL LNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELI
Sbjct: 616 LMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLVWATGFMFLISWRGYWQELI 675
Query: 621 ETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 445
ETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG
Sbjct: 676 ETLAWAHERTPLANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 682,307,952
Number of Sequences: 1393205
Number of extensions: 14852676
Number of successful extensions: 39208
Number of sequences better than 10.0: 404
Number of HSP's better than 10.0 without gapping: 37447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38998
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40896270532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
