Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015640A_C01 KMC015640A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG35782.1|AF280060_1 tonneau 1 [Oryza sativa] 174 6e-43
ref|NP_567012.1| Expressed protein; protein id: At3g55000.1, sup... 156 2e-37
gb|AAM60887.1| tonneau 1b [Arabidopsis thaliana] 155 4e-37
pir||T06720 hypothetical protein F28P10.20 - Arabidopsis thalian... 144 1e-33
ref|NP_567013.1| Expressed protein; protein id: At3g55005.1, sup... 144 1e-33
>gb|AAG35782.1|AF280060_1 tonneau 1 [Oryza sativa]
Length = 259
Score = 174 bits (442), Expect = 6e-43
Identities = 86/134 (64%), Positives = 109/134 (81%), Gaps = 3/134 (2%)
Frame = -2
Query: 579 NRNGDS-PVLLDVLEGFLKFENLSQAR--ASGRRFTTSEAEPLPNSESRTVRRHSSSSVA 409
+R+ +S P+LLDVLEG+LK+ENLSQ R +GRR SE++P N+E R RR SSS
Sbjct: 124 SRSAESGPMLLDVLEGYLKYENLSQTRMAGTGRRIINSESDPALNAEHRNTRRPPSSSSV 183
Query: 408 GGLPPLGRAVPSSQASDRRGGSSTSSYRKDEYNWRYDSDELPDDVIQASTALENLQLDRK 229
GLPP+GR +PSSQ SDRRGGSS S+ RKDEYNWRYD+D++ ++V++AS+ALEN+QLDRK
Sbjct: 184 TGLPPMGRPMPSSQMSDRRGGSSASNARKDEYNWRYDADDISEEVLRASSALENVQLDRK 243
Query: 228 ARNLTSSWRHAGDG 187
ARNLT+SWRH GDG
Sbjct: 244 ARNLTTSWRHPGDG 257
>ref|NP_567012.1| Expressed protein; protein id: At3g55000.1, supported by cDNA:
102807. [Arabidopsis thaliana]
gi|11494364|gb|AAG35779.1|AF280058_1 tonneau 1a
[Arabidopsis thaliana] gi|26449686|dbj|BAC41967.1|
unknown protein [Arabidopsis thaliana]
Length = 260
Score = 156 bits (395), Expect = 2e-37
Identities = 85/143 (59%), Positives = 103/143 (71%), Gaps = 1/143 (0%)
Frame = -2
Query: 591 GYDLNRNGDS-PVLLDVLEGFLKFENLSQARASGRRFTTSEAEPLPNSESRTVRRHSSSS 415
G++LNRNGDS P+LLDVLEGFLKFE+++Q S R SE E + ESR R SS+S
Sbjct: 120 GFELNRNGDSGPLLLDVLEGFLKFESMTQGMGSSSR-RDSETESSSSLESRNPPRRSSAS 178
Query: 414 VAGGLPPLGRAVPSSQASDRRGGSSTSSYRKDEYNWRYDSDELPDDVIQASTALENLQLD 235
LPP R V +SQASDRR G STS YRKDE+NWR + + ++V +AS ALENLQLD
Sbjct: 179 --DSLPPQRRPVSASQASDRRAGLSTSGYRKDEFNWRQGNQDTHEEVTRASAALENLQLD 236
Query: 234 RKARNLTSSWRHAGDGINEDDGR 166
RK RNLTSSWR+ DG NE++GR
Sbjct: 237 RKTRNLTSSWRNVRDGTNEEEGR 259
>gb|AAM60887.1| tonneau 1b [Arabidopsis thaliana]
Length = 260
Score = 155 bits (392), Expect = 4e-37
Identities = 85/143 (59%), Positives = 103/143 (71%), Gaps = 1/143 (0%)
Frame = -2
Query: 591 GYDLNRNGDS-PVLLDVLEGFLKFENLSQARASGRRFTTSEAEPLPNSESRTVRRHSSSS 415
G++LNRNGDS P+LLDVLEGFLKFE+++Q S R SE E + ESR R SS+S
Sbjct: 120 GFELNRNGDSGPLLLDVLEGFLKFESMTQGMGSSSR-RDSETESSSSLESRNPPRRSSAS 178
Query: 414 VAGGLPPLGRAVPSSQASDRRGGSSTSSYRKDEYNWRYDSDELPDDVIQASTALENLQLD 235
LPP R V +SQASDRR G STS YRKDE+NWR + + ++V +AS ALENLQLD
Sbjct: 179 --DSLPPQRRPVSASQASDRRVGLSTSGYRKDEFNWRQGNQDTHEEVTRASAALENLQLD 236
Query: 234 RKARNLTSSWRHAGDGINEDDGR 166
RK RNLTSSWR+ DG NE++GR
Sbjct: 237 RKTRNLTSSWRNVRDGTNEEEGR 259
>pir||T06720 hypothetical protein F28P10.20 - Arabidopsis thaliana
gi|4678293|emb|CAB41084.1| hypothetical protein
[Arabidopsis thaliana]
Length = 337
Score = 144 bits (362), Expect = 1e-33
Identities = 80/145 (55%), Positives = 104/145 (71%), Gaps = 1/145 (0%)
Frame = -2
Query: 591 GYDLNRNGDS-PVLLDVLEGFLKFENLSQARASGRRFTTSEAEPLPNSESRTVRRHSSSS 415
GY+LNRN DS P+LLDVLEGFLKFEN++Q R SE E + ++R R SS+S
Sbjct: 200 GYELNRNEDSRPLLLDVLEGFLKFENMTQVMGGSSR-RESETESSLSLDTRNPPRRSSAS 258
Query: 414 VAGGLPPLGRAVPSSQASDRRGGSSTSSYRKDEYNWRYDSDELPDDVIQASTALENLQLD 235
LP R+V +SQAS G++TS YRKDE NWRYD++++P++V++ASTALENLQLD
Sbjct: 259 --DSLPHQRRSVSASQAS----GAATSGYRKDESNWRYDTEDMPEEVMRASTALENLQLD 312
Query: 234 RKARNLTSSWRHAGDGINEDDGRAD 160
RK RNLTSSWR+ DG +E++ D
Sbjct: 313 RKTRNLTSSWRNVKDGTSEEEEGKD 337
Score = 107 bits (268), Expect = 9e-23
Identities = 67/139 (48%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Frame = -2
Query: 591 GYDLNRNGDS-PVLLDVLEGFLKFENLSQARASGRRFTTSEAEPLPNSESRTVRRHSSSS 415
G++LNRNGDS P+LLDVLEGFLKFE+++Q S R SE E + ESR R SS+S
Sbjct: 46 GFELNRNGDSGPLLLDVLEGFLKFESMTQGMGSSSR-RDSETESSSSLESRNPPRRSSAS 104
Query: 414 VAGGLPPLGRAVPSSQASDRRGGSSTSSYRKDEYNWRYDSDELPDDVIQASTALENLQLD 235
LPP RKDE+NWR + + ++V +AS ALENLQLD
Sbjct: 105 --DSLPP--------------------QRRKDEFNWRQGNQDTHEEVTRASAALENLQLD 142
Query: 234 RKARNLTSSWRHAGDGINE 178
RK RNLTSSWR D E
Sbjct: 143 RKTRNLTSSWRTMDDYTRE 161
>ref|NP_567013.1| Expressed protein; protein id: At3g55005.1, supported by cDNA:
gi_11494366, supported by cDNA: gi_18700181 [Arabidopsis
thaliana] gi|11494365|gb|AAG35780.1|AF280058_2 tonneau
1b [Arabidopsis thaliana] gi|18700182|gb|AAL77702.1|
AT3g55000/F28P10_20 [Arabidopsis thaliana]
Length = 257
Score = 144 bits (362), Expect = 1e-33
Identities = 80/145 (55%), Positives = 104/145 (71%), Gaps = 1/145 (0%)
Frame = -2
Query: 591 GYDLNRNGDS-PVLLDVLEGFLKFENLSQARASGRRFTTSEAEPLPNSESRTVRRHSSSS 415
GY+LNRN DS P+LLDVLEGFLKFEN++Q R SE E + ++R R SS+S
Sbjct: 120 GYELNRNEDSRPLLLDVLEGFLKFENMTQVMGGSSR-RESETESSLSLDTRNPPRRSSAS 178
Query: 414 VAGGLPPLGRAVPSSQASDRRGGSSTSSYRKDEYNWRYDSDELPDDVIQASTALENLQLD 235
LP R+V +SQAS G++TS YRKDE NWRYD++++P++V++ASTALENLQLD
Sbjct: 179 --DSLPHQRRSVSASQAS----GAATSGYRKDESNWRYDTEDMPEEVMRASTALENLQLD 232
Query: 234 RKARNLTSSWRHAGDGINEDDGRAD 160
RK RNLTSSWR+ DG +E++ D
Sbjct: 233 RKTRNLTSSWRNVKDGTSEEEEGKD 257
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,659,426
Number of Sequences: 1393205
Number of extensions: 10137538
Number of successful extensions: 34316
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 31870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33951
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
