Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015620A_C01 KMC015620A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB10084.1| gb|AAC80624.1~gene_id:MAC9.17~strong similarity ... 224 5e-58
ref|NP_568941.1| putative protein; protein id: At5g61840.1, supp... 224 5e-58
gb|AAM64940.1| unknown [Arabidopsis thaliana] 224 5e-58
ref|NP_174064.1| unknown protein; protein id: At1g27440.1 [Arabi... 216 1e-55
dbj|BAC20928.1| pectin-glucuronyltransferase [Nicotiana plumbagi... 216 2e-55
>dbj|BAB10084.1| gb|AAC80624.1~gene_id:MAC9.17~strong similarity to unknown protein
[Arabidopsis thaliana] gi|23821294|dbj|BAC20929.1|
NpGUT1 homolog [Arabidopsis thaliana]
Length = 341
Score = 224 bits (571), Expect = 5e-58
Identities = 105/115 (91%), Positives = 112/115 (97%)
Frame = -2
Query: 541 GCIPVIIADDIVLPFADAIPWEDIGVFVDEEDVPKLDTILTSIPPEIILRKQRLLANPSM 362
GCIPVIIADDIVLPFADAIPWEDIGVFVDE+DVP LDTILTSIPPE+ILRKQRLLANPSM
Sbjct: 227 GCIPVIIADDIVLPFADAIPWEDIGVFVDEKDVPYLDTILTSIPPEVILRKQRLLANPSM 286
Query: 361 KQAMLFPQPAQPGDAFHQVLNGLARKLPHDRSVFLKAGDKILNWTAGPVGDLKPW 197
KQAMLFPQPAQPGDAFHQVLNGLARKLPH+RSV+L+ G+K+LNWTAGPV DLKPW
Sbjct: 287 KQAMLFPQPAQPGDAFHQVLNGLARKLPHERSVYLRPGEKLLNWTAGPVADLKPW 341
>ref|NP_568941.1| putative protein; protein id: At5g61840.1, supported by cDNA:
34861., supported by cDNA: gi_15809825, supported by
cDNA: gi_17978868 [Arabidopsis thaliana]
gi|15809826|gb|AAL06841.1| AT5g61840/mac9_140
[Arabidopsis thaliana] gi|17978869|gb|AAL47406.1|
AT5g61840/mac9_140 [Arabidopsis thaliana]
Length = 415
Score = 224 bits (571), Expect = 5e-58
Identities = 105/115 (91%), Positives = 112/115 (97%)
Frame = -2
Query: 541 GCIPVIIADDIVLPFADAIPWEDIGVFVDEEDVPKLDTILTSIPPEIILRKQRLLANPSM 362
GCIPVIIADDIVLPFADAIPWEDIGVFVDE+DVP LDTILTSIPPE+ILRKQRLLANPSM
Sbjct: 301 GCIPVIIADDIVLPFADAIPWEDIGVFVDEKDVPYLDTILTSIPPEVILRKQRLLANPSM 360
Query: 361 KQAMLFPQPAQPGDAFHQVLNGLARKLPHDRSVFLKAGDKILNWTAGPVGDLKPW 197
KQAMLFPQPAQPGDAFHQVLNGLARKLPH+RSV+L+ G+K+LNWTAGPV DLKPW
Sbjct: 361 KQAMLFPQPAQPGDAFHQVLNGLARKLPHERSVYLRPGEKLLNWTAGPVADLKPW 415
>gb|AAM64940.1| unknown [Arabidopsis thaliana]
Length = 415
Score = 224 bits (571), Expect = 5e-58
Identities = 105/115 (91%), Positives = 112/115 (97%)
Frame = -2
Query: 541 GCIPVIIADDIVLPFADAIPWEDIGVFVDEEDVPKLDTILTSIPPEIILRKQRLLANPSM 362
GCIPVIIADDIVLPFADAIPWEDIGVFVDE+DVP LDTILTSIPPE+ILRKQRLLANPSM
Sbjct: 301 GCIPVIIADDIVLPFADAIPWEDIGVFVDEKDVPYLDTILTSIPPEVILRKQRLLANPSM 360
Query: 361 KQAMLFPQPAQPGDAFHQVLNGLARKLPHDRSVFLKAGDKILNWTAGPVGDLKPW 197
KQAMLFPQPAQPGDAFHQVLNGLARKLPH+RSV+L+ G+K+LNWTAGPV DLKPW
Sbjct: 361 KQAMLFPQPAQPGDAFHQVLNGLARKLPHERSVYLRPGEKLLNWTAGPVADLKPW 415
>ref|NP_174064.1| unknown protein; protein id: At1g27440.1 [Arabidopsis thaliana]
gi|9802541|gb|AAF99743.1|AC004557_22 F17L21.23
[Arabidopsis thaliana]
Length = 412
Score = 216 bits (550), Expect = 1e-55
Identities = 100/115 (86%), Positives = 110/115 (94%)
Frame = -2
Query: 541 GCIPVIIADDIVLPFADAIPWEDIGVFVDEEDVPKLDTILTSIPPEIILRKQRLLANPSM 362
GCIPVIIADDIVLPFADAIPWE+IGVFV E+DVP+LDTILTSIP E+ILRKQRLLANPSM
Sbjct: 298 GCIPVIIADDIVLPFADAIPWEEIGVFVAEKDVPELDTILTSIPTEVILRKQRLLANPSM 357
Query: 361 KQAMLFPQPAQPGDAFHQVLNGLARKLPHDRSVFLKAGDKILNWTAGPVGDLKPW 197
K+AMLFPQPAQPGDAFHQ+LNGLARKLPHD+S++LK G+K LNWTAGPV DLKPW
Sbjct: 358 KRAMLFPQPAQPGDAFHQILNGLARKLPHDKSIYLKTGEKALNWTAGPVADLKPW 412
>dbj|BAC20928.1| pectin-glucuronyltransferase [Nicotiana plumbaginifolia]
Length = 341
Score = 216 bits (549), Expect = 2e-55
Identities = 102/115 (88%), Positives = 107/115 (92%)
Frame = -2
Query: 541 GCIPVIIADDIVLPFADAIPWEDIGVFVDEEDVPKLDTILTSIPPEIILRKQRLLANPSM 362
GCIPVIIADDIVLPFADAIPWEDIGVFV E+DVP LDTILTSIPPE ILRKQRLLANPSM
Sbjct: 227 GCIPVIIADDIVLPFADAIPWEDIGVFVAEKDVPNLDTILTSIPPEEILRKQRLLANPSM 286
Query: 361 KQAMLFPQPAQPGDAFHQVLNGLARKLPHDRSVFLKAGDKILNWTAGPVGDLKPW 197
KQAMLFPQPAQ GDAFHQ+LNGLARKLPHD+S +LK G+ LNWTAGPVGDLKPW
Sbjct: 287 KQAMLFPQPAQSGDAFHQILNGLARKLPHDKSTYLKPGENFLNWTAGPVGDLKPW 341
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,276,676
Number of Sequences: 1393205
Number of extensions: 10836836
Number of successful extensions: 28366
Number of sequences better than 10.0: 101
Number of HSP's better than 10.0 without gapping: 27258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28358
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
