Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015618A_C01 KMC015618A_c01
(614 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM62971.1| putative xyloglucan endotransglycosylase [Arabido... 231 6e-60
ref|NP_192230.1| xyloglucan endotransglycosylase, putative; prot... 231 6e-60
pir||T09870 probable endo-xyloglucan transferase - upland cotton... 157 1e-37
gb|AAD39086.1|AF093507_1 xyloglucan endo-transglycosylase-like p... 154 7e-37
pir||B49539 xyloglucan endo-1,4-beta-D-glucanase (EC 3.2.1.-) - ... 150 1e-35
>gb|AAM62971.1| putative xyloglucan endotransglycosylase [Arabidopsis thaliana]
Length = 287
Score = 231 bits (589), Expect = 6e-60
Identities = 103/144 (71%), Positives = 119/144 (82%)
Frame = -2
Query: 613 QRQVVFLVDETPIRVHMNLEHKGIPFPKDQAMGVYSSLWNADDWATQGGRVKTDWSHAPF 434
+R VVF+VDETPIRV NLE KGIPF KDQAMGVYSS+WNADDWATQGG VKTDWSHAPF
Sbjct: 149 KRSVVFMVDETPIRVQKNLEEKGIPFAKDQAMGVYSSIWNADDWATQGGLVKTDWSHAPF 208
Query: 433 VATYKDFEINACECPVPVTAAENAKRCSSSEDKSYWWDEPTMSELSLHQSHQLLWVRANH 254
VA+YK+F+I+ACE P + +C+ D+ +WWDEPT+SELSLHQ+HQL+WVRANH
Sbjct: 209 VASYKEFQIDACEIP----TTTDLSKCNG--DQKFWWDEPTVSELSLHQNHQLIWVRANH 262
Query: 253 MVYDYCSDTARFPVTPAECVHHRH 182
M+YDYC D RFPVTP EC HHRH
Sbjct: 263 MIYDYCFDATRFPVTPLECQHHRH 286
>ref|NP_192230.1| xyloglucan endotransglycosylase, putative; protein id: At4g03210.1,
supported by cDNA: 17748., supported by cDNA:
gi_14994278, supported by cDNA: gi_18252836 [Arabidopsis
thaliana] gi|25313540|pir||G85040 probable xyloglucan
endotransglycosylase [imported] - Arabidopsis thaliana
gi|4262149|gb|AAD14449.1| putative xyloglucan
endotransglycosylase [Arabidopsis thaliana]
gi|7270191|emb|CAB77806.1| putative xyloglucan
endotransglycosylase [Arabidopsis thaliana]
gi|14994279|gb|AAK73274.1| putative xyloglucan
endotransglycosylase [Arabidopsis thaliana]
gi|18252837|gb|AAL62345.1| putative xyloglucan
endotransglycosylase [Arabidopsis thaliana]
gi|25084277|gb|AAN72210.1| putative xyloglucan
endotransglycosylase [Arabidopsis thaliana]
Length = 290
Score = 231 bits (589), Expect = 6e-60
Identities = 103/144 (71%), Positives = 119/144 (82%)
Frame = -2
Query: 613 QRQVVFLVDETPIRVHMNLEHKGIPFPKDQAMGVYSSLWNADDWATQGGRVKTDWSHAPF 434
+R VVF+VDETPIRV NLE KGIPF KDQAMGVYSS+WNADDWATQGG VKTDWSHAPF
Sbjct: 152 KRSVVFMVDETPIRVQKNLEEKGIPFAKDQAMGVYSSIWNADDWATQGGLVKTDWSHAPF 211
Query: 433 VATYKDFEINACECPVPVTAAENAKRCSSSEDKSYWWDEPTMSELSLHQSHQLLWVRANH 254
VA+YK+F+I+ACE P + +C+ D+ +WWDEPT+SELSLHQ+HQL+WVRANH
Sbjct: 212 VASYKEFQIDACEIP----TTTDLSKCNG--DQKFWWDEPTVSELSLHQNHQLIWVRANH 265
Query: 253 MVYDYCSDTARFPVTPAECVHHRH 182
M+YDYC D RFPVTP EC HHRH
Sbjct: 266 MIYDYCFDATRFPVTPLECQHHRH 289
>pir||T09870 probable endo-xyloglucan transferase - upland cotton (fragment)
gi|2244732|dbj|BAA21107.1| endo-xyloglucan transferase
[Gossypium hirsutum]
Length = 279
Score = 157 bits (397), Expect = 1e-37
Identities = 69/138 (50%), Positives = 92/138 (66%)
Frame = -2
Query: 607 QVVFLVDETPIRVHMNLEHKGIPFPKDQAMGVYSSLWNADDWATQGGRVKTDWSHAPFVA 428
Q+VF +DE PIRV+ N E + IP+PK Q MGVYS+LW ADDWAT+GG K DW+ APF+A
Sbjct: 148 QIVFYIDEVPIRVYKNNEARNIPYPKLQPMGVYSTLWEADDWATRGGLEKIDWTKAPFLA 207
Query: 427 TYKDFEINACECPVPVTAAENAKRCSSSEDKSYWWDEPTMSELSLHQSHQLLWVRANHMV 248
YKDF+I C P PV A N++ WW+ L+ ++ + WVR NH++
Sbjct: 208 YYKDFDIEGCPVPGPVNCATNSRN---------WWEGTAYQALNAMEAKRYRWVRMNHVI 258
Query: 247 YDYCSDTARFPVTPAECV 194
YDYC+D +R+PVTP EC+
Sbjct: 259 YDYCTDKSRYPVTPPECM 276
>gb|AAD39086.1|AF093507_1 xyloglucan endo-transglycosylase-like protein [Medicago truncatula]
Length = 276
Score = 154 bits (390), Expect = 7e-37
Identities = 70/137 (51%), Positives = 90/137 (65%)
Frame = -2
Query: 604 VVFLVDETPIRVHMNLEHKGIPFPKDQAMGVYSSLWNADDWATQGGRVKTDWSHAPFVAT 425
+VF VDE PIRV+ N E KGIP+PK QAMGV+S+LW AD+WAT+GG K +WS APF A
Sbjct: 146 IVFYVDEVPIRVYKNNEAKGIPYPKMQAMGVFSTLWEADNWATRGGLEKINWSKAPFYAY 205
Query: 424 YKDFEINACECPVPVTAAENAKRCSSSEDKSYWWDEPTMSELSLHQSHQLLWVRANHMVY 245
YKDF+I C P P T + N K WW+ LS ++ + WVR NH++Y
Sbjct: 206 YKDFDIEGCAIPGPTTCSTNPKN---------WWEGVEYQALSAIEARRYRWVRMNHVIY 256
Query: 244 DYCSDTARFPVTPAECV 194
DYC D +R+P+TP EC+
Sbjct: 257 DYCQDKSRYPMTPHECL 273
>pir||B49539 xyloglucan endo-1,4-beta-D-glucanase (EC 3.2.1.-) - soybean
Length = 292
Score = 150 bits (379), Expect = 1e-35
Identities = 71/142 (50%), Positives = 92/142 (64%), Gaps = 1/142 (0%)
Frame = -2
Query: 607 QVVFLVDETPIRVHMNLEHKGIPFPKDQAMGVYSSLWNADDWATQGGRVKTDWSHAPFVA 428
Q+VF VDE PIRV N + G+ FP DQ M +Y+SLWNADDWAT+GG KTDWS APF+A
Sbjct: 157 QIVFFVDEVPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIA 216
Query: 427 TYKDFEINACECPVPVTAAENAKRCSSSEDKSYWWDEPTMSELSLHQSHQLLWVRANHMV 248
YK F I+ CE A+ NAK C + + WWD+P +L Q +L WVR + +
Sbjct: 217 AYKGFHIDGCE------ASVNAKFCDTQGKR--WWDQPEFRDLDAAQWRRLRWVRQKYTI 268
Query: 247 YDYCSDTARFP-VTPAECVHHR 185
Y+YC+DT R+P ++P EC R
Sbjct: 269 YNYCTDTKRYPHISPPECKRDR 290
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 569,599,919
Number of Sequences: 1393205
Number of extensions: 13385605
Number of successful extensions: 47989
Number of sequences better than 10.0: 180
Number of HSP's better than 10.0 without gapping: 42477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47100
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
