Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015584A_C01 KMC015584A_c01
(451 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A86409 hypothetical protein F3H9.7 [imported] - Arabidopsis... 98 2e-20
gb|AAK43845.1|AF370468_1 Unknown protein [Arabidopsis thaliana] 98 2e-20
ref|NP_564303.1| expressed protein; protein id: At1g28280.1, sup... 98 2e-20
gb|AAM67358.1| unknown [Arabidopsis thaliana] 98 2e-20
ref|NP_200194.1| putative protein; protein id: At5g53830.1, supp... 94 3e-19
>pir||A86409 hypothetical protein F3H9.7 [imported] - Arabidopsis thaliana
gi|9795609|gb|AAF98427.1|AC021044_6 Unknown protein
[Arabidopsis thaliana]
Length = 259
Score = 98.2 bits (243), Expect = 2e-20
Identities = 49/82 (59%), Positives = 60/82 (72%), Gaps = 8/82 (9%)
Frame = -2
Query: 450 SLLDFPSLTLSPVTPLNDDALGNSSSSE--------EDKAIAEKGFYLHPSPVSTPRDSE 295
S+LDFPSL LSPVTPL D S SS E+KA+ E+GFYLHPSP +TP D E
Sbjct: 177 SILDFPSLVLSPVTPLIPDPFDRSGSSNQSPNELAAEEKAMKERGFYLHPSPATTPMDPE 236
Query: 294 PQLLPLFPLSSPRVSGSATTTT 229
P+LLPLFP++SPRVSGS++ +T
Sbjct: 237 PRLLPLFPVTSPRVSGSSSAST 258
>gb|AAK43845.1|AF370468_1 Unknown protein [Arabidopsis thaliana]
Length = 247
Score = 98.2 bits (243), Expect = 2e-20
Identities = 49/82 (59%), Positives = 60/82 (72%), Gaps = 8/82 (9%)
Frame = -2
Query: 450 SLLDFPSLTLSPVTPLNDDALGNSSSSE--------EDKAIAEKGFYLHPSPVSTPRDSE 295
S+LDFPSL LSPVTPL D S SS E+KA+ E+GFYLHPSP +TP D E
Sbjct: 165 SILDFPSLVLSPVTPLIPDPFDRSGSSNQSPNELAAEEKAMKERGFYLHPSPATTPMDPE 224
Query: 294 PQLLPLFPLSSPRVSGSATTTT 229
P+LLPLFP++SPRVSGS++ +T
Sbjct: 225 PRLLPLFPVTSPRVSGSSSAST 246
>ref|NP_564303.1| expressed protein; protein id: At1g28280.1, supported by cDNA:
20991. [Arabidopsis thaliana]
Length = 113
Score = 98.2 bits (243), Expect = 2e-20
Identities = 49/82 (59%), Positives = 60/82 (72%), Gaps = 8/82 (9%)
Frame = -2
Query: 450 SLLDFPSLTLSPVTPLNDDALGNSSSSE--------EDKAIAEKGFYLHPSPVSTPRDSE 295
S+LDFPSL LSPVTPL D S SS E+KA+ E+GFYLHPSP +TP D E
Sbjct: 31 SILDFPSLVLSPVTPLIPDPFDRSGSSNQSPNELAAEEKAMKERGFYLHPSPATTPMDPE 90
Query: 294 PQLLPLFPLSSPRVSGSATTTT 229
P+LLPLFP++SPRVSGS++ +T
Sbjct: 91 PRLLPLFPVTSPRVSGSSSAST 112
>gb|AAM67358.1| unknown [Arabidopsis thaliana]
Length = 141
Score = 98.2 bits (243), Expect = 2e-20
Identities = 49/82 (59%), Positives = 60/82 (72%), Gaps = 8/82 (9%)
Frame = -2
Query: 450 SLLDFPSLTLSPVTPLNDDALGNSSSSE--------EDKAIAEKGFYLHPSPVSTPRDSE 295
S+LDFPSL LSPVTPL D S SS E+KA+ E+GFYLHPSP +TP D E
Sbjct: 59 SILDFPSLVLSPVTPLIPDPFDRSGSSNQSPNELAAEEKAMKERGFYLHPSPATTPMDPE 118
Query: 294 PQLLPLFPLSSPRVSGSATTTT 229
P+LLPLFP++SPRVSGS++ +T
Sbjct: 119 PRLLPLFPVTSPRVSGSSSAST 140
>ref|NP_200194.1| putative protein; protein id: At5g53830.1, supported by cDNA:
gi_13926341 [Arabidopsis thaliana]
gi|9759077|dbj|BAB09555.1|
gb|AAF34839.1~gene_id:MGN6.22~similar to unknown protein
[Arabidopsis thaliana]
gi|13926342|gb|AAK49634.1|AF372918_1 AT5g53830/MGN6_22
[Arabidopsis thaliana] gi|22135787|gb|AAM91050.1|
AT5g53830/MGN6_22 [Arabidopsis thaliana]
Length = 243
Score = 94.4 bits (233), Expect = 3e-19
Identities = 52/73 (71%), Positives = 57/73 (77%), Gaps = 9/73 (12%)
Frame = -2
Query: 450 SLLDFPSLTL-SPVTPL--NDDALGNSS------SSEEDKAIAEKGFYLHPSPVSTPRDS 298
S+LDFP L L SPVTPL NDD SS SSEEDKAIA+KGFYLHPSPVSTPRDS
Sbjct: 167 SMLDFPKLGLNSPVTPLRSNDDPFNKSSPLSLGNSSEEDKAIADKGFYLHPSPVSTPRDS 226
Query: 297 EPQLLPLFPLSSP 259
+P LLPLFP++SP
Sbjct: 227 QPLLLPLFPVASP 239
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 332,801,772
Number of Sequences: 1393205
Number of extensions: 6073987
Number of successful extensions: 22366
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 21835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22341
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 6588926928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
