Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015539A_C01 KMC015539A_c01
(696 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195409.1| putative protein; protein id: At4g36910.1 [Arab... 197 2e-49
ref|NP_567952.1| putative protein; protein id: At4g34120.1, supp... 192 3e-48
pir||T05424 hypothetical protein F28A23.120 - Arabidopsis thalia... 128 9e-29
ref|ZP_00072250.1| hypothetical protein [Trichodesmium erythraeu... 67 2e-10
ref|NP_441980.1| IMP dehydrogenase [Synechocystis sp. PCC 6803] ... 65 7e-10
>ref|NP_195409.1| putative protein; protein id: At4g36910.1 [Arabidopsis thaliana]
gi|25407775|pir||H85435 hypothetical protein AT4g36910
[imported] - Arabidopsis thaliana
gi|4006881|emb|CAB16799.1| putative protein [Arabidopsis
thaliana] gi|7270640|emb|CAB80357.1| putative protein
[Arabidopsis thaliana] gi|21537376|gb|AAM61717.1|
unknown [Arabidopsis thaliana]
gi|28392900|gb|AAO41886.1| unknown protein [Arabidopsis
thaliana] gi|28827758|gb|AAO50723.1| unknown protein
[Arabidopsis thaliana]
Length = 236
Score = 197 bits (500), Expect = 2e-49
Identities = 96/120 (80%), Positives = 111/120 (92%)
Frame = -3
Query: 694 PVIDDKWNLVGVVSDYDLLALDSISGNGRKESSMFPEVDSSWKTFNEVQNLLSKTNGKVI 515
PVID+ W LVG+VSDYDLLALDSISG+GR E+SMFPEVDS+WKTFN VQ LLSKTNGK++
Sbjct: 112 PVIDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTFNAVQKLLSKTNGKLV 171
Query: 514 GELMTTAPMVVRENTNLEDAARLLLETKFRRLPVVDSEGRLVGIITRGNVVGAALQIKRA 335
G+LMT AP+VV E TNLEDAA++LLETK+RRLPVVDS+G+LVGIITRGNVV AALQIKR+
Sbjct: 172 GDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKRS 231
Score = 36.6 bits (83), Expect = 0.34
Identities = 17/49 (34%), Positives = 30/49 (60%), Gaps = 2/49 (4%)
Frame = -3
Query: 517 IGELMTTAP--MVVRENTNLEDAARLLLETKFRRLPVVDSEGRLVGIIT 377
+GE MT VV+ T +++A LL+E + PV+D + +LVG+++
Sbjct: 77 VGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVS 125
>ref|NP_567952.1| putative protein; protein id: At4g34120.1, supported by cDNA:
gi_13430837, supported by cDNA: gi_15810600 [Arabidopsis
thaliana] gi|13430838|gb|AAK26041.1|AF360331_1 unknown
protein [Arabidopsis thaliana]
gi|15810601|gb|AAL07188.1| unknown protein [Arabidopsis
thaliana]
Length = 238
Score = 192 bits (489), Expect = 3e-48
Identities = 91/123 (73%), Positives = 112/123 (90%)
Frame = -3
Query: 694 PVIDDKWNLVGVVSDYDLLALDSISGNGRKESSMFPEVDSSWKTFNEVQNLLSKTNGKVI 515
PVIDD W LVGVVSDYDLLALDSISG + ++++FP+VDS+WKTFNE+Q L+SKT GKV+
Sbjct: 114 PVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVV 173
Query: 514 GELMTTAPMVVRENTNLEDAARLLLETKFRRLPVVDSEGRLVGIITRGNVVGAALQIKRA 335
G+LMT +P+VVR++TNLEDAARLLLETKFRRLPVVD++G+L+GI+TRGNVV AALQIKR
Sbjct: 174 GDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRE 233
Query: 334 IQN 326
+N
Sbjct: 234 TEN 236
Score = 45.8 bits (107), Expect = 6e-04
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Frame = -3
Query: 655 SDYDLLALDSISGNGRKESSMFPEVDSSW-----KTFNEVQNLLSKTNGKVIGELMTTAP 491
S + LL L N R+ S+ P + S + N ++ +K G +G+ MT
Sbjct: 32 SSFSLLPLS----NRRRSSTFSPSITVSAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQ 87
Query: 490 M--VVRENTNLEDAARLLLETKFRRLPVVDSEGRLVGIIT 377
VV+ +T+++DA LL+E K LPV+D LVG+++
Sbjct: 88 NLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVS 127
>pir||T05424 hypothetical protein F28A23.120 - Arabidopsis thaliana
gi|2911050|emb|CAA17560.1| putative protein [Arabidopsis
thaliana] gi|7270361|emb|CAB80129.1| putative protein
[Arabidopsis thaliana]
Length = 249
Score = 128 bits (321), Expect = 9e-29
Identities = 72/128 (56%), Positives = 86/128 (66%), Gaps = 24/128 (18%)
Frame = -3
Query: 694 PVIDDKWNLVGVVSDYDLLALDSISGNGRKESSMFPEVD--------------------- 578
PVIDD W LVGVVSDYDLLALDSIS + S+ V
Sbjct: 114 PVIDDNWTLVGVVSDYDLLALDSISVKMIQTCSLMSTVPGKTIVCFICMNFLGMRFTYIM 173
Query: 577 ---SSWKTFNEVQNLLSKTNGKVIGELMTTAPMVVRENTNLEDAARLLLETKFRRLPVVD 407
S +TFNE+Q L+SKT GKV+G+LMT +P+VVR++TNLEDAARLLLETKFRRLPVVD
Sbjct: 174 LEFSFGQTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVD 233
Query: 406 SEGRLVGI 383
++G+LV I
Sbjct: 234 ADGKLVSI 241
Score = 45.8 bits (107), Expect = 6e-04
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Frame = -3
Query: 655 SDYDLLALDSISGNGRKESSMFPEVDSSW-----KTFNEVQNLLSKTNGKVIGELMTTAP 491
S + LL L N R+ S+ P + S + N ++ +K G +G+ MT
Sbjct: 32 SSFSLLPLS----NRRRSSTFSPSITVSAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQ 87
Query: 490 M--VVRENTNLEDAARLLLETKFRRLPVVDSEGRLVGIIT 377
VV+ +T+++DA LL+E K LPV+D LVG+++
Sbjct: 88 NLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVS 127
>ref|ZP_00072250.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 153
Score = 67.0 bits (162), Expect = 2e-10
Identities = 40/115 (34%), Positives = 61/115 (52%), Gaps = 2/115 (1%)
Frame = -3
Query: 694 PVIDDKWNLVGVVSDYDLLALDSISGNGRKESSMFPEVDSSWKTFN--EVQNLLSKTNGK 521
PV+DD LVG+VS+ DL+ +S G +DS N + + K G+
Sbjct: 39 PVVDDNGKLVGIVSETDLMWQES----GVTPPPYIMLLDSIIFLENPGRYEKEIHKALGE 94
Query: 520 VIGELMTTAPMVVRENTNLEDAARLLLETKFRRLPVVDSEGRLVGIITRGNVVGA 356
+ E+MT P+ R L A+L+ E RLPVVD G+++GI+TRG+++ A
Sbjct: 95 TVEEIMTKNPLTTRSQERLSATAKLMNERSIHRLPVVDENGKVIGILTRGDIIRA 149
Score = 47.4 bits (111), Expect = 2e-04
Identities = 20/54 (37%), Positives = 37/54 (68%)
Frame = -3
Query: 523 KVIGELMTTAPMVVRENTNLEDAARLLLETKFRRLPVVDSEGRLVGIITRGNVV 362
K++ E+M++ P+ V+ T L++A ++L E LPVVD G+LVGI++ +++
Sbjct: 4 KIVSEVMSSNPITVKPKTPLKEAIKILAEKHISGLPVVDDNGKLVGIVSETDLM 57
>ref|NP_441980.1| IMP dehydrogenase [Synechocystis sp. PCC 6803]
gi|7429342|pir||S76072 yhcV homolog - Synechocystis sp.
(strain PCC 6803) gi|1001427|dbj|BAA10050.1| IMP
dehydrogenase [Synechocystis sp. PCC 6803]
Length = 155
Score = 65.5 bits (158), Expect = 7e-10
Identities = 43/116 (37%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
Frame = -3
Query: 694 PVIDDKWNLVGVVSDYDLLALDSISGNGRKESSMFPEVDSSWKTFNEVQNL--LSKTNGK 521
PV+DD+ LVGV+SD DL+ +S G +DS N ++ L K G+
Sbjct: 38 PVLDDQEKLVGVISDTDLMWQES----GVDTPPYVMLLDSIIYLQNPARHERELHKALGQ 93
Query: 520 VIGELMTTAPMVVRENTNLEDAARLLLETKFRRLPVVDSEGR-LVGIITRGNVVGA 356
+GE+M P+ + L +AA L+ E K RRLPV++ E R L+GI+T+G+++ A
Sbjct: 94 TVGEVMNDVPISILPTQTLREAAHLMNEKKIRRLPVLNVESRQLIGILTQGDIIRA 149
Score = 49.3 bits (116), Expect = 5e-05
Identities = 21/49 (42%), Positives = 35/49 (70%)
Frame = -3
Query: 523 KVIGELMTTAPMVVRENTNLEDAARLLLETKFRRLPVVDSEGRLVGIIT 377
+ +GE+MT P+ V+ +T L+DA RLL E + +PV+D + +LVG+I+
Sbjct: 3 RTVGEVMTPNPITVKPDTPLQDAIRLLAENRISGMPVLDDQEKLVGVIS 51
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 553,697,305
Number of Sequences: 1393205
Number of extensions: 11387143
Number of successful extensions: 28221
Number of sequences better than 10.0: 586
Number of HSP's better than 10.0 without gapping: 24186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27911
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31684559424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
