Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015527A_C01 KMC015527A_c01
(540 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173361.1| unknown protein; protein id: At1g19270.1 [Arabi... 125 3e-28
pir||D86326 hypothetical protein T29M8.14 - Arabidopsis thaliana... 120 1e-26
gb|AAL31691.1|AC092390_12 unknown protein, 5' partial [Oryza sat... 119 2e-26
ref|NP_195404.2| putative protein; protein id: At4g36860.1, supp... 119 2e-26
pir||C85435 hypothetical protein AT4g36860 [imported] - Arabidop... 119 2e-26
>ref|NP_173361.1| unknown protein; protein id: At1g19270.1 [Arabidopsis thaliana]
Length = 532
Score = 125 bits (314), Expect = 3e-28
Identities = 62/96 (64%), Positives = 75/96 (77%)
Frame = -3
Query: 538 VEEGICQVLAHIWLESELSSAPAGNFVSTSSSPAPYTSKKSKRPDFERKLGEFFKHQIQS 359
VEEGICQV+AH WL++EL+ A + N + SSS + KK R +ERKLGEFFKHQI+S
Sbjct: 437 VEEGICQVMAHKWLDAELA-AGSTNSNAASSSSSSQGLKKGPRSQYERKLGEFFKHQIES 495
Query: 358 DISPVYGDGFRAGQKAVHKFGLQRTLPHIMMTGSFP 251
D SPVYGDGFRAG+ AVHK+GL++TL HI MTG FP
Sbjct: 496 DASPVYGDGFRAGRLAVHKYGLRKTLEHIQMTGRFP 531
>pir||D86326 hypothetical protein T29M8.14 - Arabidopsis thaliana
gi|8954064|gb|AAF82237.1|AC069143_13 Contains a weak
similarity to an actin-binding LIM protein, isoform a,
from Homo sapiens gi|4504999 and contains multiple LIM
proteins PF|00412 and PPR repeats PF|01535. EST
gb|N96780 comes from this gene. [Arabidopsis thaliana]
Length = 763
Score = 120 bits (300), Expect = 1e-26
Identities = 60/94 (63%), Positives = 73/94 (76%)
Frame = -3
Query: 538 VEEGICQVLAHIWLESELSSAPAGNFVSTSSSPAPYTSKKSKRPDFERKLGEFFKHQIQS 359
VEEGICQV+AH WL++EL+ A + N + SSS + KK R +ERKLGEFFKHQI+S
Sbjct: 455 VEEGICQVMAHKWLDAELA-AGSTNSNAASSSSSSQGLKKGPRSQYERKLGEFFKHQIES 513
Query: 358 DISPVYGDGFRAGQKAVHKFGLQRTLPHIMMTGS 257
D SPVYGDGFRAG+ AVHK+GL++TL HI MT S
Sbjct: 514 DASPVYGDGFRAGRLAVHKYGLRKTLEHIQMTAS 547
>gb|AAL31691.1|AC092390_12 unknown protein, 5' partial [Oryza sativa]
Length = 223
Score = 119 bits (299), Expect = 2e-26
Identities = 62/103 (60%), Positives = 78/103 (75%), Gaps = 7/103 (6%)
Frame = -3
Query: 538 VEEGICQVLAHIWLESELSSAP-------AGNFVSTSSSPAPYTSKKSKRPDFERKLGEF 380
VEEGICQVLAH+WLESE++S A + S+SSS AP +SKK + DFE+KLGEF
Sbjct: 121 VEEGICQVLAHMWLESEITSGSSSIIASIAASSSSSSSSSAP-SSKKGVQTDFEKKLGEF 179
Query: 379 FKHQIQSDISPVYGDGFRAGQKAVHKFGLQRTLPHIMMTGSFP 251
FKHQI++D S VYGDGFR G KAV ++GL++TL H+ +TG FP
Sbjct: 180 FKHQIETDPSDVYGDGFRDGIKAVERYGLRKTLDHMKLTGVFP 222
>ref|NP_195404.2| putative protein; protein id: At4g36860.1, supported by cDNA:
gi_17065045 [Arabidopsis thaliana]
Length = 351
Score = 119 bits (298), Expect = 2e-26
Identities = 61/98 (62%), Positives = 74/98 (75%), Gaps = 2/98 (2%)
Frame = -3
Query: 538 VEEGICQVLAHIWLESELSSAPAGNFVSTSSSPAPYT--SKKSKRPDFERKLGEFFKHQI 365
VEEGICQVLAH+WLESE + +++SSS A + SKK +R DFE+KLGEFFKHQI
Sbjct: 251 VEEGICQVLAHMWLESETYAGSTLVDIASSSSSAVVSASSKKGERSDFEKKLGEFFKHQI 310
Query: 364 QSDISPVYGDGFRAGQKAVHKFGLQRTLPHIMMTGSFP 251
+SD S YGDGFR G +AV K GL+RTL HI +TG+FP
Sbjct: 311 ESDSSSAYGDGFRQGNQAVLKHGLRRTLDHIRLTGTFP 348
>pir||C85435 hypothetical protein AT4g36860 [imported] - Arabidopsis thaliana
gi|4006886|emb|CAB16816.1| putative protein [Arabidopsis
thaliana] gi|7270635|emb|CAB80352.1| putative protein
[Arabidopsis thaliana]
Length = 542
Score = 119 bits (298), Expect = 2e-26
Identities = 61/98 (62%), Positives = 74/98 (75%), Gaps = 2/98 (2%)
Frame = -3
Query: 538 VEEGICQVLAHIWLESELSSAPAGNFVSTSSSPAPYT--SKKSKRPDFERKLGEFFKHQI 365
VEEGICQVLAH+WLESE + +++SSS A + SKK +R DFE+KLGEFFKHQI
Sbjct: 442 VEEGICQVLAHMWLESETYAGSTLVDIASSSSSAVVSASSKKGERSDFEKKLGEFFKHQI 501
Query: 364 QSDISPVYGDGFRAGQKAVHKFGLQRTLPHIMMTGSFP 251
+SD S YGDGFR G +AV K GL+RTL HI +TG+FP
Sbjct: 502 ESDSSSAYGDGFRQGNQAVLKHGLRRTLDHIRLTGTFP 539
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 440,287,385
Number of Sequences: 1393205
Number of extensions: 9114401
Number of successful extensions: 24976
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 22132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24196
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
