Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015498A_C01 KMC015498A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175643.1| hypothetical protein; protein id: At1g52330.1 [... 92 3e-18
gb|AAO19373.1| hypothetical protein [Oryza sativa (japonica cult... 80 2e-14
ref|NP_193063.1| hypothetical protein; protein id: At4g13270.1 [... 80 2e-14
gb|AAM62885.1| unknown [Arabidopsis thaliana] 42 0.004
ref|NP_190988.1| putative protein; protein id: At3g54200.1, supp... 42 0.005
>ref|NP_175643.1| hypothetical protein; protein id: At1g52330.1 [Arabidopsis
thaliana] gi|25405542|pir||E96563 hypothetical protein
F19K6.6 [imported] - Arabidopsis thaliana
gi|12323119|gb|AAG51539.1|AC037424_4 hypothetical
protein; 44111-43310 [Arabidopsis thaliana]
Length = 214
Score = 92.4 bits (228), Expect = 3e-18
Identities = 45/87 (51%), Positives = 58/87 (65%)
Frame = -2
Query: 550 SSDGGRIRARGSSYVDAVLTVDGFEVIYDAFYLLQDIAKGVIPFDTETRVDGKLGLFFFD 371
SSDGG + A GSSY+DA +DG V D +L+ D+AKG + FDT T +GKLG+ FF
Sbjct: 127 SSDGGHVTAFGSSYLDAEAELDGVMVFPDVIHLIHDLAKGSVEFDTVTETNGKLGVLFFR 186
Query: 370 VPLKATVSCEVYVNINKQTIVRQNCYP 290
PLKA V+C + V+ QTI RQ+C P
Sbjct: 187 FPLKAKVACGILVDTVNQTISRQSCSP 213
>gb|AAO19373.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 259
Score = 79.7 bits (195), Expect = 2e-14
Identities = 36/75 (48%), Positives = 52/75 (69%)
Frame = -2
Query: 550 SSDGGRIRARGSSYVDAVLTVDGFEVIYDAFYLLQDIAKGVIPFDTETRVDGKLGLFFFD 371
+S GGR+RAR SY+DA L++DG V+ DA YLL+D+A+G +PFDT V+G + LFF
Sbjct: 139 TSGGGRVRARAVSYIDANLSLDGISVVEDAIYLLEDLARGSVPFDTVAEVEGHVHLFFLS 198
Query: 370 VPLKATVSCEVYVNI 326
+P+K C+ + I
Sbjct: 199 IPVKE--GCDTMIGI 211
>ref|NP_193063.1| hypothetical protein; protein id: At4g13270.1 [Arabidopsis
thaliana] gi|7487860|pir||T06284 hypothetical protein
T9E8.10 - Arabidopsis thaliana
gi|4584532|emb|CAB40762.1| hypothetical protein
[Arabidopsis thaliana] gi|7268030|emb|CAB78369.1|
hypothetical protein [Arabidopsis thaliana]
Length = 192
Score = 79.7 bits (195), Expect = 2e-14
Identities = 34/63 (53%), Positives = 48/63 (75%)
Frame = -2
Query: 547 SDGGRIRARGSSYVDAVLTVDGFEVIYDAFYLLQDIAKGVIPFDTETRVDGKLGLFFFDV 368
S GG ++AR SSY+DA L +DG EV++D YL+ D+AKGVIPFDT +V G LG+ F++
Sbjct: 129 SKGGHLKARDSSYIDATLELDGLEVVHDVIYLIGDLAKGVIPFDTIAQVQGDLGVLLFNI 188
Query: 367 PLK 359
P++
Sbjct: 189 PIQ 191
>gb|AAM62885.1| unknown [Arabidopsis thaliana]
Length = 235
Score = 42.4 bits (98), Expect = 0.004
Identities = 23/81 (28%), Positives = 48/81 (58%), Gaps = 1/81 (1%)
Frame = -2
Query: 535 RIRARGSSYVDAVLTVDGFEVIYDAFYLLQDIAKGVIPFDTETRVDGKLG-LFFFDVPLK 359
RI AR + ++ LT+ ++ + LL D+ GVIP +T +V GK+ L F + ++
Sbjct: 150 RIAARKTVPLNITLTLMADRLLSET-QLLSDVMAGVIPLNTFVKVTGKVTVLKIFKIKVQ 208
Query: 358 ATVSCEVYVNINKQTIVRQNC 296
++ SC++ ++++ + + Q+C
Sbjct: 209 SSSSCDLSISVSNRNVTSQHC 229
>ref|NP_190988.1| putative protein; protein id: At3g54200.1, supported by cDNA: 1678.
[Arabidopsis thaliana] gi|11357593|pir||T47579
hypothetical protein F24B22.160 - Arabidopsis thaliana
gi|6822066|emb|CAB70994.1| putative protein [Arabidopsis
thaliana]
Length = 235
Score = 42.0 bits (97), Expect = 0.005
Identities = 23/81 (28%), Positives = 48/81 (58%), Gaps = 1/81 (1%)
Frame = -2
Query: 535 RIRARGSSYVDAVLTVDGFEVIYDAFYLLQDIAKGVIPFDTETRVDGKLG-LFFFDVPLK 359
RI AR + ++ LT+ ++ + LL D+ GVIP +T +V GK+ L F + ++
Sbjct: 150 RIAARKTVPLNITLTLMADRLLSET-QLLSDVMAGVIPLNTFVKVTGKVTVLKIFKIKVQ 208
Query: 358 ATVSCEVYVNINKQTIVRQNC 296
++ SC++ ++++ + + Q+C
Sbjct: 209 SSSSCDLSISVSDRNVTSQHC 229
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,841,387
Number of Sequences: 1393205
Number of extensions: 10048316
Number of successful extensions: 33520
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 31702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33194
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
