Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015483A_C01 KMC015483A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM88632.1| unknown protein [Oryza sativa (japonica cultivar-... 97 1e-19
ref|NP_194298.1| putative protein; protein id: At4g25680.1, supp... 94 8e-19
ref|NP_194296.1| putative protein; protein id: At4g25660.1, supp... 93 2e-18
dbj|BAA90636.1| hypothetical protein [Oryza sativa (japonica cul... 42 0.006
ref|XP_208375.1| similar to hypothetical protein FLJ10408 [Homo ... 35 0.79
>gb|AAM88632.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 246
Score = 97.4 bits (241), Expect = 1e-19
Identities = 50/85 (58%), Positives = 64/85 (74%), Gaps = 1/85 (1%)
Frame = -3
Query: 551 GDTAMEVAGNTALRFRQAKTEIVSASKVAYRFLVGV-TNNVKTGPESPTNSNRGGGSPRF 375
GDTA+ VA NTA++FRQAKTEIV+AS+VAYRF+ G+ + N PESP+N +R G P F
Sbjct: 142 GDTAVVVAENTAVKFRQAKTEIVNASRVAYRFMAGLASKNQNPQPESPSNQSRNG--PTF 199
Query: 374 QASWLKNIITNGAKPSTSSEGESQN 300
Q +W KNII+NGAKPS+S S +
Sbjct: 200 QGTWFKNIISNGAKPSSSESTSSHD 224
>ref|NP_194298.1| putative protein; protein id: At4g25680.1, supported by cDNA:
122917. [Arabidopsis thaliana] gi|7486773|pir||T09560
hypothetical protein L73G19.60 - Arabidopsis thaliana
gi|4914460|emb|CAB43699.1| putative protein [Arabidopsis
thaliana] gi|7269418|emb|CAB81378.1| putative protein
[Arabidopsis thaliana] gi|21537182|gb|AAM61523.1|
unknown [Arabidopsis thaliana]
gi|27808564|gb|AAO24562.1| At4g25680 [Arabidopsis
thaliana]
Length = 252
Score = 94.4 bits (233), Expect = 8e-19
Identities = 58/112 (51%), Positives = 72/112 (63%), Gaps = 9/112 (8%)
Frame = -3
Query: 551 GDTAMEVAGNTALRFRQAKTEIVSASKVAYRFLVGVTNNVKTG----PESP-TNSNRGGG 387
GDTA+EVAGNTA+R +QAKTE+VSASKVAYRFL VT+NV G P+ P T +N G
Sbjct: 142 GDTALEVAGNTAMRMKQAKTELVSASKVAYRFLSNVTSNVTNGSNGSPQRPGTLNNSDSG 201
Query: 386 SPRFQASWLKNIITNGAKPSTSSE----GESQNGVVPLQHTREDDDNKALLR 243
+ R Q SWLK ++ N AKPSTS+E E N V Q + D + L +
Sbjct: 202 NLRLQGSWLKGLL-NTAKPSTSTEIGNKDEDANHAVTNQKKQSRDSDVLLFQ 252
>ref|NP_194296.1| putative protein; protein id: At4g25660.1, supported by cDNA:
20902. [Arabidopsis thaliana] gi|7486771|pir||T09558
hypothetical protein L73G19.40 - Arabidopsis thaliana
gi|4914458|emb|CAB43697.1| putative protein [Arabidopsis
thaliana] gi|7269416|emb|CAB81376.1| putative protein
[Arabidopsis thaliana] gi|25082894|gb|AAN72011.1|
putative protein [Arabidopsis thaliana]
Length = 255
Score = 93.2 bits (230), Expect = 2e-18
Identities = 58/115 (50%), Positives = 72/115 (62%), Gaps = 12/115 (10%)
Frame = -3
Query: 551 GDTAMEVAGNTALRFRQAKTEIVSASKVAYRFLVGVTNNVKTG-------PESP-TNSNR 396
GDTA+EVAGNTA+R +QAKTE+VSASKVAYRFL VT+N+ G P+ P T +N
Sbjct: 142 GDTALEVAGNTAMRVKQAKTELVSASKVAYRFLSNVTSNITNGSNGSSGSPQRPGTLNNS 201
Query: 395 GGGSPRFQASWLKNIITNGAKPSTSSE----GESQNGVVPLQHTREDDDNKALLR 243
GS R Q SWLK I+ N AKPSTS+E E N + Q + D + L +
Sbjct: 202 DNGSFRLQGSWLKGIL-NTAKPSTSTEIGNKEEDTNHTITNQKKQNRDSDVLLFQ 255
>dbj|BAA90636.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 209
Score = 41.6 bits (96), Expect = 0.006
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Frame = -3
Query: 506 RQAKTEIVSASKVAYRFLVGVTNNVKTGPESPTNSNRGGGSPR---FQASWLKNIITNGA 336
+QAK +I A K A +L G +++ SP+N++ GGS F+ +WL++II
Sbjct: 107 KQAKKDIAGACKAATTYLTGASSS------SPSNADDSGGSTNSSLFEGTWLRSIIGISM 160
Query: 335 KPSTS 321
KPS S
Sbjct: 161 KPSRS 165
>ref|XP_208375.1| similar to hypothetical protein FLJ10408 [Homo sapiens]
Length = 266
Score = 34.7 bits (78), Expect = 0.79
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -1
Query: 523 ILHYGSGKPKQRLYQQAKSHTGSS*VLLIMLKLAQSPLPIQTEEEDP 383
+LH SGKP ++L K T SS + L++A P+P+ T + P
Sbjct: 117 LLHIFSGKPPEKLLPNRKGSTESS----VFLRVASRPMPVHTTSKRP 159
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,795,933
Number of Sequences: 1393205
Number of extensions: 9508241
Number of successful extensions: 23534
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 22792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23511
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
