Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015481A_C01 KMC015481A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00060856.1| hypothetical protein [Clostridium thermocellu... 32 7.5
ref|NP_593802.1| hypothetical protein [Schizosaccharomyces pombe... 31 9.7
>ref|ZP_00060856.1| hypothetical protein [Clostridium thermocellum ATCC 27405]
Length = 203
Score = 31.6 bits (70), Expect = 7.5
Identities = 16/54 (29%), Positives = 26/54 (47%), Gaps = 1/54 (1%)
Frame = -1
Query: 435 KKWEKCSLLLGKMFNSSIVTRETDTELKVHFQDFSVQNW*ISCLGEGP-GVIEY 277
++W + +MFN I+T E H +D +N+ + LG P GV+ Y
Sbjct: 28 REWRNQDFVRQRMFNREIITEEEHARFIEHLKDNREKNYYVCFLGNKPFGVLYY 81
>ref|NP_593802.1| hypothetical protein [Schizosaccharomyces pombe]
gi|7490731|pir||T38305 hypothetical protein - fission
yeast (Schizosaccharomyces pombe)
gi|2408040|emb|CAB16238.1| hypothetical protein
[Schizosaccharomyces pombe]
Length = 226
Score = 31.2 bits (69), Expect = 9.7
Identities = 24/67 (35%), Positives = 35/67 (51%), Gaps = 4/67 (5%)
Frame = +2
Query: 104 LQAISPEKLLNIVPL-QPLY---G*QLACSTFMDSLNRNGKL*MTSTNHFALPLIPMPPI 271
L+AI+P K LN L Q LY L ST + LNR+ +L T TN+ +I +P
Sbjct: 73 LRAIAPVKKLNDTELHQTLYIEHPPNLESSTILAELNRSKQLQKTHTNYLIGNIIGLPLT 132
Query: 272 LKYSMTP 292
+ + + P
Sbjct: 133 IPFILIP 139
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,642,422
Number of Sequences: 1393205
Number of extensions: 10616512
Number of successful extensions: 19115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19112
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
