Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015459A_C01 KMC015459A_c01
(341 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63701.1| putativepod-specific dehydrogenase SAC25 [Arabido... 74 4e-13
gb|AAM13049.1| putative protein [Arabidopsis thaliana] gi|231981... 74 4e-13
ref|NP_568102.1| putative protein; protein id: At5g02540.1, supp... 74 4e-13
pir||T48275 hypothetical protein T22P11.130 - Arabidopsis thalia... 74 4e-13
ref|NP_181290.1| putative oxidoreductase; protein id: At2g37540.... 70 9e-12
>gb|AAM63701.1| putativepod-specific dehydrogenase SAC25 [Arabidopsis thaliana]
Length = 331
Score = 74.3 bits (181), Expect = 4e-13
Identities = 33/47 (70%), Positives = 40/47 (84%)
Frame = -3
Query: 339 LHPSMEGVTGKYFVDCNEFKPSSFARNKILARKLWDFSNKLIDSISK 199
LHPS++GVTGKYF DCNE PS AR++ LA+KLWDFS KLI+S+SK
Sbjct: 275 LHPSVKGVTGKYFADCNEVTPSKLARDETLAQKLWDFSVKLINSVSK 321
>gb|AAM13049.1| putative protein [Arabidopsis thaliana] gi|23198190|gb|AAN15622.1|
putative protein [Arabidopsis thaliana]
Length = 331
Score = 74.3 bits (181), Expect = 4e-13
Identities = 33/47 (70%), Positives = 40/47 (84%)
Frame = -3
Query: 339 LHPSMEGVTGKYFVDCNEFKPSSFARNKILARKLWDFSNKLIDSISK 199
LHPS++GVTGKYF DCNE PS AR++ LA+KLWDFS KLI+S+SK
Sbjct: 275 LHPSVKGVTGKYFADCNEVTPSKLARDETLAQKLWDFSVKLINSVSK 321
>ref|NP_568102.1| putative protein; protein id: At5g02540.1, supported by cDNA:
26538., supported by cDNA: gi_20260301 [Arabidopsis
thaliana]
Length = 331
Score = 74.3 bits (181), Expect = 4e-13
Identities = 33/47 (70%), Positives = 40/47 (84%)
Frame = -3
Query: 339 LHPSMEGVTGKYFVDCNEFKPSSFARNKILARKLWDFSNKLIDSISK 199
LHPS++GVTGKYF DCNE PS AR++ LA+KLWDFS KLI+S+SK
Sbjct: 275 LHPSVKGVTGKYFADCNEVTPSKLARDETLAQKLWDFSVKLINSVSK 321
>pir||T48275 hypothetical protein T22P11.130 - Arabidopsis thaliana
gi|7413643|emb|CAB85991.1| putative protein [Arabidopsis
thaliana]
Length = 350
Score = 74.3 bits (181), Expect = 4e-13
Identities = 33/47 (70%), Positives = 40/47 (84%)
Frame = -3
Query: 339 LHPSMEGVTGKYFVDCNEFKPSSFARNKILARKLWDFSNKLIDSISK 199
LHPS++GVTGKYF DCNE PS AR++ LA+KLWDFS KLI+S+SK
Sbjct: 294 LHPSVKGVTGKYFADCNEVTPSKLARDETLAQKLWDFSVKLINSVSK 340
>ref|NP_181290.1| putative oxidoreductase; protein id: At2g37540.1, supported by
cDNA: gi_20466184 [Arabidopsis thaliana]
gi|7485438|pir||T02520 probable oxidoreductase
[imported] - Arabidopsis thaliana
gi|3236237|gb|AAC23625.1| putative oxidoreductase
[Arabidopsis thaliana] gi|20466185|gb|AAM20410.1|
putative oxidoreductase [Arabidopsis thaliana]
gi|24899833|gb|AAN65131.1| putative oxidoreductase
[Arabidopsis thaliana]
Length = 321
Score = 69.7 bits (169), Expect = 9e-12
Identities = 34/47 (72%), Positives = 35/47 (74%)
Frame = -3
Query: 339 LHPSMEGVTGKYFVDCNEFKPSSFARNKILARKLWDFSNKLIDSISK 199
LHP +EGVTGKYF DCN PS FA N LA KLWDFS LIDSISK
Sbjct: 275 LHPDLEGVTGKYFGDCNIVAPSKFATNNSLADKLWDFSVFLIDSISK 321
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 267,175,576
Number of Sequences: 1393205
Number of extensions: 4580206
Number of successful extensions: 9755
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 9618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9755
length of database: 448,689,247
effective HSP length: 89
effective length of database: 324,694,002
effective search space used: 7792656048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
