Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015448A_C01 KMC015448A_c01
(721 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB91728.1| P0671D01.4 [Oryza sativa (japonica cultivar-grou... 103 3e-21
emb|CAD39846.1| OSJNBb0072N21.12 [Oryza sativa (japonica cultiva... 100 3e-20
dbj|BAB89458.1| OSJNBb0021A09.10 [Oryza sativa (japonica cultiva... 93 3e-18
dbj|BAB85281.1| P0684E06.27 [Oryza sativa (japonica cultivar-gro... 87 2e-16
dbj|BAC16150.1| hypothetical protein~similar to Arabidopsis thal... 74 3e-12
>dbj|BAB91728.1| P0671D01.4 [Oryza sativa (japonica cultivar-group)]
gi|21952903|dbj|BAC06315.1| P0445H04.27 [Oryza sativa
(japonica cultivar-group)]
Length = 232
Score = 103 bits (256), Expect = 3e-21
Identities = 51/112 (45%), Positives = 74/112 (65%)
Frame = -1
Query: 721 IHASLFNFLANPNHTFVGVGIAEDAEKLLLDYDLGVANTVDLRTVAADVMSDPALKNAGI 542
+ SL FLA FVGVG+ +DAE+L D+ L VANT DLR +AA + P L AG+
Sbjct: 120 VPGSLRRFLAGAADCFVGVGVDKDAERLSDDHGLTVANTADLRPLAAQRLGRPELSQAGL 179
Query: 541 RTLAQRVMGRDVAKPRRITMSKWDNLWLVADQVQYAAVDAFVSSQIGLTLFQ 386
+ + + VMG D+ KP+R+TMS+WD L +Q++YA +DA+VS ++G L +
Sbjct: 180 QAVVRAVMGADLVKPQRVTMSRWDASCLSNEQIRYACIDAYVSFEVGRRLLR 231
>emb|CAD39846.1| OSJNBb0072N21.12 [Oryza sativa (japonica cultivar-group)]
Length = 211
Score = 99.8 bits (247), Expect = 3e-20
Identities = 49/108 (45%), Positives = 67/108 (61%)
Frame = -1
Query: 712 SLFNFLANPNHTFVGVGIAEDAEKLLLDYDLGVANTVDLRTVAADVMSDPALKNAGIRTL 533
+L FLA+P TFVGVG+ +DA +L + Y L V VDLR +AAD + P L+ AG+R L
Sbjct: 97 ALSRFLADPRFTFVGVGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRAL 156
Query: 532 AQRVMGRDVAKPRRITMSKWDNLWLVADQVQYAAVDAFVSSQIGLTLF 389
+ VMG + KP + +S WD L DQ +YA DAF S ++G L+
Sbjct: 157 VREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYACADAFASREVGRRLY 204
>dbj|BAB89458.1| OSJNBb0021A09.10 [Oryza sativa (japonica cultivar-group)]
Length = 501
Score = 93.2 bits (230), Expect = 3e-18
Identities = 48/107 (44%), Positives = 66/107 (60%)
Frame = -1
Query: 709 LFNFLANPNHTFVGVGIAEDAEKLLLDYDLGVANTVDLRTVAADVMSDPALKNAGIRTLA 530
L +FL + TFVGVGI +D +KL YDL V N VDLR +AA + PAL++ G++ L
Sbjct: 391 LGDFLGDGRFTFVGVGIHDDVDKLREHYDLEVENAVDLRYLAAQTIGKPALRSTGLQGLV 450
Query: 529 QRVMGRDVAKPRRITMSKWDNLWLVADQVQYAAVDAFVSSQIGLTLF 389
VM + KP + +S WD+ L DQV YA DAF S ++G +L+
Sbjct: 451 WEVMDVWMEKPHHVRVSAWDSRQLTLDQVMYACADAFASFEVGRSLY 497
Score = 90.5 bits (223), Expect = 2e-17
Identities = 48/100 (48%), Positives = 63/100 (63%)
Frame = -1
Query: 712 SLFNFLANPNHTFVGVGIAEDAEKLLLDYDLGVANTVDLRTVAADVMSDPALKNAGIRTL 533
SLF+FLA+ TFVGVGI +D KL + L V N VDLR +AA + PAL++AG++ L
Sbjct: 97 SLFDFLADGRFTFVGVGIHDDVAKLRSHHGLEVENVVDLRYLAAQTIGKPALRSAGLQGL 156
Query: 532 AQRVMGRDVAKPRRITMSKWDNLWLVADQVQYAAVDAFVS 413
+ VMG KP + +S WD+ L +QV YA DAF S
Sbjct: 157 VREVMGVWAPKPYHVRVSAWDSWNLTPEQVMYACADAFAS 196
>dbj|BAB85281.1| P0684E06.27 [Oryza sativa (japonica cultivar-group)]
gi|21952895|dbj|BAC06307.1| P0445H04.18 [Oryza sativa
(japonica cultivar-group)]
Length = 391
Score = 87.4 bits (215), Expect = 2e-16
Identities = 48/106 (45%), Positives = 64/106 (60%)
Frame = -1
Query: 709 LFNFLANPNHTFVGVGIAEDAEKLLLDYDLGVANTVDLRTVAADVMSDPALKNAGIRTLA 530
L FLA+P+ FVGV + D ++L D +L VA VDLR AA V+ P L AG++ LA
Sbjct: 275 LAEFLADPSVRFVGVAVNNDMQRLANDCNLRVACAVDLRYAAAAVLGQPELARAGLKRLA 334
Query: 529 QRVMGRDVAKPRRITMSKWDNLWLVADQVQYAAVDAFVSSQIGLTL 392
VMG + K + IT S+W L +QV YA +DA+VS +IG L
Sbjct: 335 LTVMGAHMEKEKNITKSRWGEPTLTWEQVNYACIDAYVSYEIGRRL 380
>dbj|BAC16150.1| hypothetical protein~similar to Arabidopsis thaliana chromosome2,
At2g36110 [Oryza sativa (japonica cultivar-group)]
gi|24414042|dbj|BAC22291.1| hypothetical protein~similar
to Arabidopsis thaliana chromosome2, At2g36110 [Oryza
sativa (japonica cultivar-group)]
Length = 752
Score = 73.6 bits (179), Expect = 3e-12
Identities = 44/111 (39%), Positives = 65/111 (57%), Gaps = 1/111 (0%)
Frame = -1
Query: 721 IHASLFNFLANPNHTFVGVGIAEDAEKLLLDYDLGVANTVDLRTVAADVMSDPALKNAGI 542
I A+L FLA+P TFVG G + D L YDL VA+ +LR VA A+ NA +
Sbjct: 108 IPAALRRFLADPRITFVGSGASNDRRMLSAYYDLHVASARELRAVA-------AMGNASM 160
Query: 541 RTLAQRVMG-RDVAKPRRITMSKWDNLWLVADQVQYAAVDAFVSSQIGLTL 392
+A R +G +AKP ++MS W +L +QV+YA VDA+++ ++ + L
Sbjct: 161 EAMADRFLGYPGIAKPTNVSMSAWHAPYLSIEQVEYACVDAYLAFRLAVHL 211
Score = 56.2 bits (134), Expect = 4e-07
Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Frame = -1
Query: 715 ASLFNFLANPN-HTFVGVGIAEDAEKLLLDYDLGVANTVDLRTVAADVMSDPALKNAGIR 539
A+L FLA+ FVG GI D KL + L VA T +LR V + ++ +
Sbjct: 637 AALRRFLADGGVAAFVGYGIRSDCRKLAAHHGLHVACTRELRAVTG-------MGSSSMA 689
Query: 538 TLAQRVMG-RDVAKPRRITMSKWDNLWLVADQVQYAAVDAFVSSQIGL 398
+A+ ++G + KP + S+WD L QV+YA VDAF+S ++G+
Sbjct: 690 RMAEELLGLAGIKKPAAVGRSRWDAPKLSKKQVKYACVDAFLSHRLGV 737
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 655,803,443
Number of Sequences: 1393205
Number of extensions: 15581317
Number of successful extensions: 76927
Number of sequences better than 10.0: 249
Number of HSP's better than 10.0 without gapping: 61036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75009
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33499052993
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
