Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015445A_C01 KMC015445A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC87810.2| Tic62 protein [Pisum sativum] 41 0.012
gb|EAA35484.1| predicted protein [Neurospora crassa] 37 0.17
ref|NP_567209.1| expressed protein; protein id: At4g01050.1, sup... 37 0.17
pir||H85013 hypothetical protein AT4g01050 [imported] - Arabidop... 37 0.17
gb|AAN72050.1| Unknown protein [Arabidopsis thaliana] 36 0.39
>emb|CAC87810.2| Tic62 protein [Pisum sativum]
Length = 534
Score = 40.8 bits (94), Expect = 0.012
Identities = 33/96 (34%), Positives = 43/96 (44%)
Frame = -1
Query: 559 DTLLPPSLHMYRRKKTKASQKLSTNGNGAIQKNDSKNESSLSLEVPTVENQKTENGHVKR 380
D L PPS TK S+K N + A+ S + S E+ + +Q T + K
Sbjct: 395 DDLKPPS----SPSPTKPSEKKQINISDAVPTPISSDTPSSIQEIDGI-SQTTSSSKGKE 449
Query: 379 SVESGPEMRTGSRASSSLYPNYPDLKPPSSPTPSKP 272
S+ S Y YPDLKPPSSP+PS P
Sbjct: 450 SL--------------SPYAAYPDLKPPSSPSPSVP 471
Score = 37.0 bits (84), Expect = 0.17
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Frame = -1
Query: 460 DSKNESSLSLEVPTVENQKTE------NGHVKRSVESGPE-----MRTGSRASSSLYPNY 314
D K SS S VPT K + NG + SVE P+ + S Y Y
Sbjct: 459 DLKPPSSPSPSVPTTSLSKRDTVVVSSNGPAQLSVEDTPKNEEQHLHEPKSRPLSPYAMY 518
Query: 313 PDLKPPSSPTPS 278
DLKPP+SP+PS
Sbjct: 519 EDLKPPASPSPS 530
Score = 35.8 bits (81), Expect = 0.39
Identities = 26/73 (35%), Positives = 34/73 (45%), Gaps = 6/73 (8%)
Frame = -1
Query: 472 IQKNDSKNESSLS------LEVPTVENQKTENGHVKRSVESGPEMRTGSRASSSLYPNYP 311
+QK D+ S+ EVP++ QK S P +T S Y Y
Sbjct: 346 VQKADTATVSNTGPSANVVAEVPSIAPQK--------ETASKPVAKTEQPLSP--YTAYD 395
Query: 310 DLKPPSSPTPSKP 272
DLKPPSSP+P+KP
Sbjct: 396 DLKPPSSPSPTKP 408
>gb|EAA35484.1| predicted protein [Neurospora crassa]
Length = 728
Score = 37.0 bits (84), Expect = 0.17
Identities = 28/88 (31%), Positives = 40/88 (44%), Gaps = 3/88 (3%)
Frame = -1
Query: 565 IQDTLLPPSLHMYRRKKTKASQKLSTNGNGAIQKNDSKNESSLSLEVPTVENQ---KTEN 395
I D PSL +Y +KK SQ L GA +K +++E V + ++ KT
Sbjct: 334 IIDASKRPSLELYIKKKVPHSQTLPEEV-GASRKESARHERPSGDSVQDLRSKLDVKTST 392
Query: 394 GHVKRSVESGPEMRTGSRASSSLYPNYP 311
GHV+ + S E G + S PN P
Sbjct: 393 GHVQDWIRSHTEPAVGRVRAPSFVPNSP 420
>ref|NP_567209.1| expressed protein; protein id: At4g01050.1, supported by cDNA:
gi_15982914, supported by cDNA: gi_16323193 [Arabidopsis
thaliana] gi|15982915|gb|AAL09804.1| AT4g01050/F2N1_31
[Arabidopsis thaliana] gi|16323194|gb|AAL15331.1|
AT4g01050/F2N1_31 [Arabidopsis thaliana]
gi|21700911|gb|AAM70579.1| AT4g01050/F2N1_31
[Arabidopsis thaliana]
Length = 466
Score = 37.0 bits (84), Expect = 0.17
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -1
Query: 331 SLYPNYPDLKPPSSPTPSKP 272
S Y +YPDLKPPSSP PS+P
Sbjct: 447 SPYASYPDLKPPSSPMPSQP 466
>pir||H85013 hypothetical protein AT4g01050 [imported] - Arabidopsis thaliana
gi|7267602|emb|CAB80914.1| hypothetical protein
[Arabidopsis thaliana]
Length = 457
Score = 37.0 bits (84), Expect = 0.17
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -1
Query: 331 SLYPNYPDLKPPSSPTPSKP 272
S Y +YPDLKPPSSP PS+P
Sbjct: 438 SPYASYPDLKPPSSPMPSQP 457
>gb|AAN72050.1| Unknown protein [Arabidopsis thaliana]
Length = 641
Score = 35.8 bits (81), Expect = 0.39
Identities = 29/101 (28%), Positives = 41/101 (39%), Gaps = 7/101 (6%)
Frame = -1
Query: 559 DTLLPPSLHMYRRKKTKASQKLS-------TNGNGAIQKNDSKNESSLSLEVPTVENQKT 401
+ L PPS T+ S LS T+ + + K ++ + S+ +V
Sbjct: 452 ENLKPPSSPSPTASSTRKSDSLSPGPTDSDTDKSSTVAKTVTETAVATSVTETSVATSVP 511
Query: 400 ENGHVKRSVESGPEMRTGSRASSSLYPNYPDLKPPSSPTPS 278
E V SV T S Y Y DLKPP+SPTP+
Sbjct: 512 ETA-VATSVTETAAPATSKMRPLSPYAIYADLKPPTSPTPA 551
Score = 31.2 bits (69), Expect = 9.5
Identities = 27/102 (26%), Positives = 39/102 (37%), Gaps = 5/102 (4%)
Frame = -1
Query: 568 AIQDTLLPPSLHMYRRKKTKASQKLSTN-----GNGAIQKNDSKNESSLSLEVPTVENQK 404
AI L PP+ K + + N GN + K N +++ P E
Sbjct: 537 AIYADLKPPTSPTPASTGPKEAASVEDNSELPGGNNDVLKTVDGNLNTIPPSTP--EAVP 594
Query: 403 TENGHVKRSVESGPEMRTGSRASSSLYPNYPDLKPPSSPTPS 278
+ + S+ SG S Y Y D+KPP+SP PS
Sbjct: 595 VVSSAIDTSLASGDNTAQPKPRPLSPYTMYADMKPPTSPLPS 636
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,274,415
Number of Sequences: 1393205
Number of extensions: 10624751
Number of successful extensions: 30846
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 28788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30733
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
