Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015412A_C01 KMC015412A_c01
(1097 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189554.1| SNARE protein AtVTI13; protein id: At3g29100.1 ... 334 2e-90
ref|NP_198767.1| v-SNARE AtVTI1a (ZIG); protein id: At5g39510.1,... 331 1e-89
gb|AAF24061.1|AF114750_1 v-SNARE AtVTI1a [Arabidopsis thaliana] 329 4e-89
dbj|BAB86528.1| putative vesicle transport v-SNARE protein [Oryz... 325 6e-88
dbj|BAB85407.1| similar to vesicle transport protein [Oryza sati... 291 2e-77
>ref|NP_189554.1| SNARE protein AtVTI13; protein id: At3g29100.1 [Arabidopsis
thaliana] gi|27805771|sp|Q9LVP9|VT13_ARATH Vesicle
transport v-SNARE 13 (AtVTI13) (Vesicle transport
v-SNARE protein VTI13) (Vesicle soluble NSF attachment
protein receptor 13) gi|9294029|dbj|BAB01986.1| vesicle
transport v-SNARE (vesicle soluble NSF attachment
protein receptor) protein [Arabidopsis thaliana]
Length = 221
Score = 334 bits (856), Expect = 2e-90
Identities = 166/221 (75%), Positives = 196/221 (88%)
Frame = -3
Query: 978 MSNVFEGYERQYCELSANLSKKCTAAGSLNGEQKKQKVSEIKAGIDEAEALIRKMDLEAR 799
MS FE YERQYCE+SANLSKKCT+A +L+GEQKKQ +SEIK+G++EAEAL++KMDLEAR
Sbjct: 1 MSQGFERYERQYCEISANLSKKCTSAIALDGEQKKQNLSEIKSGVEEAEALVKKMDLEAR 60
Query: 798 SLQPNVRAVLLAKLREYKSDLNNLKSEVKKIVSGNLNPSARDELLESGMADTLTASSDQR 619
+L PNV++ LL KLREYKSDLNN K+EVK+I SGNLN +ARDELLE+GMADTLTAS+DQR
Sbjct: 61 NLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMADTLTASADQR 120
Query: 618 SRLMMSTDRLNKTGDRVQQSRKTMLETEELGVSILQDLHSQRQSLLHAHTTLHGVDDNIG 439
SRLMMSTD L +T DR++ SR+T+LETEELGVSILQDLH QRQSLL AH TLHGVDDN+G
Sbjct: 121 SRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHETLHGVDDNVG 180
Query: 438 KSQKILTNMTRRMNKNKWIICGIVLVLVIAIALILYFKLSK 316
KS+KILT MTRRMN+NKW I I+ VLV+AI ILYFKL++
Sbjct: 181 KSKKILTTMTRRMNRNKWTIGAIITVLVLAIIFILYFKLTR 221
>ref|NP_198767.1| v-SNARE AtVTI1a (ZIG); protein id: At5g39510.1, supported by cDNA:
gi_17979269, supported by cDNA: gi_20147178, supported
by cDNA: gi_6690273 [Arabidopsis thaliana]
gi|27805773|sp|Q9SEL6|VT11_ARATH Vesicle transport
v-SNARE 11 (AtVTI11) (Vesicle transport v-SNARE protein
VTI1a) (Vesicle soluble NSF attachment protein receptor
VTI1a) (AtVTI1a) gi|10177700|dbj|BAB11026.1| v-SNARE
AtVTI1a [Arabidopsis thaliana]
gi|17979270|gb|AAL49951.1| AT5g39510/MUL8_190
[Arabidopsis thaliana] gi|20147179|gb|AAM10306.1|
AT5g39510/MUL8_190 [Arabidopsis thaliana]
Length = 221
Score = 331 bits (848), Expect = 1e-89
Identities = 164/221 (74%), Positives = 198/221 (89%)
Frame = -3
Query: 978 MSNVFEGYERQYCELSANLSKKCTAAGSLNGEQKKQKVSEIKAGIDEAEALIRKMDLEAR 799
MS+VF+GYERQYCELSA+LSKKC++A SL+GEQKKQK+SEIK+G++ AE LIRKMDLEAR
Sbjct: 1 MSDVFDGYERQYCELSASLSKKCSSAISLDGEQKKQKLSEIKSGLENAEVLIRKMDLEAR 60
Query: 798 SLQPNVRAVLLAKLREYKSDLNNLKSEVKKIVSGNLNPSARDELLESGMADTLTASSDQR 619
+L PN+++ LL KLRE+KSDLNN K+EVK+I SG LN +ARDELLE+GMADT TAS+DQR
Sbjct: 61 TLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQR 120
Query: 618 SRLMMSTDRLNKTGDRVQQSRKTMLETEELGVSILQDLHSQRQSLLHAHTTLHGVDDNIG 439
+RLMMST+RL +T DRV+ SR+TM+ETEE+GVSILQDLH QRQSLL AH TLHGVDDNIG
Sbjct: 121 ARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETLHGVDDNIG 180
Query: 438 KSQKILTNMTRRMNKNKWIICGIVLVLVIAIALILYFKLSK 316
KS+KILT+MTRRMNKNKW I I++ L+ AI +ILYFKL+K
Sbjct: 181 KSKKILTDMTRRMNKNKWTIGAIIIALIAAIFIILYFKLTK 221
>gb|AAF24061.1|AF114750_1 v-SNARE AtVTI1a [Arabidopsis thaliana]
Length = 221
Score = 329 bits (844), Expect = 4e-89
Identities = 163/221 (73%), Positives = 197/221 (88%)
Frame = -3
Query: 978 MSNVFEGYERQYCELSANLSKKCTAAGSLNGEQKKQKVSEIKAGIDEAEALIRKMDLEAR 799
MS+ F+GYERQYCELSA+LSKKC++A SL+GEQKKQK+SEIK+G++ AE LIRKMDLEAR
Sbjct: 1 MSDAFDGYERQYCELSASLSKKCSSAISLDGEQKKQKLSEIKSGLENAEVLIRKMDLEAR 60
Query: 798 SLQPNVRAVLLAKLREYKSDLNNLKSEVKKIVSGNLNPSARDELLESGMADTLTASSDQR 619
+L PN+++ LL KLRE+KSDLNN K+EVK+I SG LN +ARDELLE+GMADT TAS+DQR
Sbjct: 61 TLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQR 120
Query: 618 SRLMMSTDRLNKTGDRVQQSRKTMLETEELGVSILQDLHSQRQSLLHAHTTLHGVDDNIG 439
+RLMMST+RL +T DRV+ SR+TM+ETEE+GVSILQDLH QRQSLL AH TLHGVDDNIG
Sbjct: 121 ARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETLHGVDDNIG 180
Query: 438 KSQKILTNMTRRMNKNKWIICGIVLVLVIAIALILYFKLSK 316
KS+KILT+MTRRMNKNKW I I++ L+ AI +ILYFKL+K
Sbjct: 181 KSKKILTDMTRRMNKNKWTIGAIIIALIAAIFIILYFKLTK 221
>dbj|BAB86528.1| putative vesicle transport v-SNARE protein [Oryza sativa (japonica
cultivar-group)] gi|20804648|dbj|BAB92337.1| putative
vesicle transport v-SNARE protein [Oryza sativa
(japonica cultivar-group)]
Length = 221
Score = 325 bits (834), Expect = 6e-88
Identities = 159/220 (72%), Positives = 199/220 (90%)
Frame = -3
Query: 978 MSNVFEGYERQYCELSANLSKKCTAAGSLNGEQKKQKVSEIKAGIDEAEALIRKMDLEAR 799
MS VFEGYERQYCE+SA+L +KCT A +L+GE+KKQK+SEI++G++EAE+LIRKMDLEAR
Sbjct: 1 MSEVFEGYERQYCEVSASLFRKCTTASALDGEKKKQKLSEIQSGVEEAESLIRKMDLEAR 60
Query: 798 SLQPNVRAVLLAKLREYKSDLNNLKSEVKKIVSGNLNPSARDELLESGMADTLTASSDQR 619
SLQP+V+A LLAKLREYKSDLNNLKSE+K+I + N + R+ELLESG+ADTL AS+DQR
Sbjct: 61 SLQPSVKAGLLAKLREYKSDLNNLKSELKRISAPNARQATREELLESGLADTLAASTDQR 120
Query: 618 SRLMMSTDRLNKTGDRVQQSRKTMLETEELGVSILQDLHSQRQSLLHAHTTLHGVDDNIG 439
RLMM+T+RLN++ D++++SR+T+LETEELGVSILQDLH QRQSLLHAHTTLHGVDDN+G
Sbjct: 121 GRLMMTTERLNQSNDKIKESRRTILETEELGVSILQDLHQQRQSLLHAHTTLHGVDDNVG 180
Query: 438 KSQKILTNMTRRMNKNKWIICGIVLVLVIAIALILYFKLS 319
KS+KIL M++RM++NKWII GI+ LV+AI LILYFKL+
Sbjct: 181 KSKKILAAMSKRMDRNKWIIGGIIAALVLAILLILYFKLA 220
>dbj|BAB85407.1| similar to vesicle transport protein [Oryza sativa (japonica
cultivar-group)]
Length = 221
Score = 291 bits (744), Expect = 2e-77
Identities = 143/218 (65%), Positives = 183/218 (83%)
Frame = -3
Query: 978 MSNVFEGYERQYCELSANLSKKCTAAGSLNGEQKKQKVSEIKAGIDEAEALIRKMDLEAR 799
M++VFEGYERQYCE+SA+L++KCTAA +L GE+ KQK SEIK+GID AEALI+KMDLEAR
Sbjct: 1 MADVFEGYERQYCEISASLARKCTAASALQGEKLKQKASEIKSGIDGAEALIKKMDLEAR 60
Query: 798 SLQPNVRAVLLAKLREYKSDLNNLKSEVKKIVSGNLNPSARDELLESGMADTLTASSDQR 619
+ QP+VRA LLAKLREYKSDLNNLK +K++ +GN +R+ELLESGMA+TL S+DQ+
Sbjct: 61 NQQPSVRAGLLAKLREYKSDLNNLKGTLKRVTTGNAQQGSREELLESGMAETLGVSADQK 120
Query: 618 SRLMMSTDRLNKTGDRVQQSRKTMLETEELGVSILQDLHSQRQSLLHAHTTLHGVDDNIG 439
SRL+ T++ NKT DR++ S +TMLETE+LGVS+LQDLH QR+ L+HAH TL VDDNIG
Sbjct: 121 SRLLRITEKQNKTTDRIRDSHRTMLETEDLGVSLLQDLHQQRERLIHAHGTLDNVDDNIG 180
Query: 438 KSQKILTNMTRRMNKNKWIICGIVLVLVIAIALILYFK 325
KS++I+ M RRM++NKWII I+ +LV+ I +ILYFK
Sbjct: 181 KSRRIMGAMVRRMDRNKWIIGFIIALLVLVILVILYFK 218
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 866,273,661
Number of Sequences: 1393205
Number of extensions: 17899365
Number of successful extensions: 86365
Number of sequences better than 10.0: 231
Number of HSP's better than 10.0 without gapping: 53033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79495
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 65889269280
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
