Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015377A_C01 KMC015377A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG44776.1|AF271796_1 biotin carboxyl carrier protein subunit... 131 6e-30
gb|AAG44765.1|AF271071_1 biotin carboxyl carrier protein subunit... 131 6e-30
ref|XP_226214.1| similar to Putative protein family member, nema... 38 0.093
gb|EAA35342.1| predicted protein [Neurospora crassa] 37 0.21
ref|NP_650744.1| CG7709-PA [Drosophila melanogaster] gi|7300427|... 36 0.27
>gb|AAG44776.1|AF271796_1 biotin carboxyl carrier protein subunit [Glycine max]
Length = 284
Score = 131 bits (329), Expect = 6e-30
Identities = 79/122 (64%), Positives = 87/122 (70%), Gaps = 4/122 (3%)
Frame = +2
Query: 200 SSFTVPCPKCL--SFTGSGLNSRTPPPQNMQIRSGLGLKESGSFGSLSHDSAAPNGIQAL 373
+SFT+PCPKC+ F GLNS+T Q R+ LGLK+S SFGSLS DSA PNGIQ L
Sbjct: 2 ASFTIPCPKCVVVPFAHLGLNSQT------QQRNALGLKKSLSFGSLSSDSA-PNGIQCL 54
Query: 374 NRKQYSVWKFQALPSEAATVGNSSNSAPVLVKEPKVASLEEKD--NGKPSGPSTSTDASS 547
N+KQ SVWK QA P EA TV NSAPV V PK+A EEKD NGKPSGPSTS DASS
Sbjct: 55 NKKQSSVWKLQAQPKEAVTV---ENSAPVQVNGPKIAPPEEKDDHNGKPSGPSTSADASS 111
Query: 548 IS 553
IS
Sbjct: 112 IS 113
>gb|AAG44765.1|AF271071_1 biotin carboxyl carrier protein subunit precursor [Glycine max]
Length = 284
Score = 131 bits (329), Expect = 6e-30
Identities = 79/122 (64%), Positives = 87/122 (70%), Gaps = 4/122 (3%)
Frame = +2
Query: 200 SSFTVPCPKCL--SFTGSGLNSRTPPPQNMQIRSGLGLKESGSFGSLSHDSAAPNGIQAL 373
+SFT+PCPKC+ F GLNS+T Q R+ LGLK+S SFGSLS DSA PNGIQ L
Sbjct: 2 ASFTIPCPKCVVVPFAHLGLNSQT------QQRNALGLKKSLSFGSLSSDSA-PNGIQCL 54
Query: 374 NRKQYSVWKFQALPSEAATVGNSSNSAPVLVKEPKVASLEEKD--NGKPSGPSTSTDASS 547
N+KQ SVWK QA P EA TV NSAPV V PK+A EEKD NGKPSGPSTS DASS
Sbjct: 55 NKKQSSVWKLQAQPKEAVTV---ENSAPVQVNGPKIAPPEEKDDHNGKPSGPSTSADASS 111
Query: 548 IS 553
IS
Sbjct: 112 IS 113
>ref|XP_226214.1| similar to Putative protein family member, nematode specific
[Caenorhabditis elegans] [Rattus norvegicus]
Length = 886
Score = 37.7 bits (86), Expect = 0.093
Identities = 35/104 (33%), Positives = 47/104 (44%), Gaps = 13/104 (12%)
Frame = +2
Query: 263 TPPPQNMQIRSGLGLKESGSFGSLSHDS-------AAPNGIQA----LNRKQYSVWKFQA 409
TPP + + S G K G+ S+ H S G+Q+ N Q + + F
Sbjct: 542 TPPSKAAILHSSSGAK--GASNSMPHPSMWTPTTACYRTGVQSTHTLFNELQSNDYAFTK 599
Query: 410 LPSEA-ATVGNSSNSAPVLVKEPKVA-SLEEKDNGKPSGPSTST 535
PS A A VG S SA EP++A S D G+PSGP +T
Sbjct: 600 KPSSATAAVGLPSQSASGSKTEPRLAGSASSADYGRPSGPRKAT 643
>gb|EAA35342.1| predicted protein [Neurospora crassa]
Length = 580
Score = 36.6 bits (83), Expect = 0.21
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +1
Query: 1 SVVFHLRVSIIHHPSLAASTTFSSFPTTLSSSISSPF-QNPYITRLTDFNPQPRNL 165
S+VF R SII PS ++ + S PTT + SS + Q PY+T + P P NL
Sbjct: 254 SLVFRARPSIIPVPSSTSNFSQQSAPTTYQTEPSSLYLQPPYLTPIDFRRPSPTNL 309
>ref|NP_650744.1| CG7709-PA [Drosophila melanogaster] gi|7300427|gb|AAF55584.1|
CG7709-PA [Drosophila melanogaster]
Length = 950
Score = 36.2 bits (82), Expect = 0.27
Identities = 35/122 (28%), Positives = 50/122 (40%), Gaps = 3/122 (2%)
Frame = +2
Query: 197 ASSFTVPCPKCLSFTGSGLNSRTP--PPQNMQIRSGLGLKESGSFGSLSHDSAAPNGIQA 370
+SS+ P S G+ +S P PP S G SGS S SAAP+ + +
Sbjct: 530 SSSYEAPVAPPSSSYGAPSSSFQPISPPS-----SSYGAPSSGSGSSSGSFSAAPSSLYS 584
Query: 371 LNRKQYSVWKFQALPSEAATVGN-SSNSAPVLVKEPKVASLEEKDNGKPSGPSTSTDASS 547
K S FQ+ PS + + + S+NS P + + GP S +SS
Sbjct: 585 APSKGSSGGSFQSAPSSSYSAPSASANSGGSYPSAPSSSYSAPSSSSSSGGPYASAPSSS 644
Query: 548 IS 553
S
Sbjct: 645 YS 646
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 533,352,861
Number of Sequences: 1393205
Number of extensions: 12799544
Number of successful extensions: 43567
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 40621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43443
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
