Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015357A_C01 KMC015357A_c01
(499 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42141.1| putative enoyl-CoA hydratase/isomerase [Arabidop... 216 1e-55
dbj|BAB91741.1| putative naphthoate synthase [Oryza sativa (japo... 215 3e-55
ref|NP_176255.1| hypothetical protein; protein id: At1g60550.1 [... 205 3e-52
ref|NP_797310.1| naphthoate synthase [Vibrio parahaemolyticus RI... 167 6e-41
ref|NP_231607.1| naphthoate synthase [Vibrio cholerae] gi|112691... 167 8e-41
>dbj|BAC42141.1| putative enoyl-CoA hydratase/isomerase [Arabidopsis thaliana]
Length = 337
Score = 216 bits (550), Expect = 1e-55
Identities = 103/120 (85%), Positives = 113/120 (93%)
Frame = -1
Query: 499 YGSSIMSRLVGPKKAREMWFLTRFYTAVEADKMGLVNTVVPLENLEKETIKWCREILRNS 320
YGSSIMSRLV PKKAREMWF+TRFYTA EA+KMGL+NTVVPLE+LEKET+KWCREILRNS
Sbjct: 218 YGSSIMSRLVCPKKAREMWFMTRFYTASEAEKMGLINTVVPLEDLEKETVKWCREILRNS 277
Query: 319 PTAIRVLKSALNAVDDGHAGLQEIGGNATLIFYGTEEANEGKTAYMQRRPPDFFKFPRRP 140
PTAIRVLK+ALNAVDDGHAGLQ +GG+ATL+FYGTEEA EG+TAYM RRPPDF KF RRP
Sbjct: 278 PTAIRVLKAALNAVDDGHAGLQGLGGDATLLFYGTEEATEGRTAYMHRRPPDFSKFHRRP 337
>dbj|BAB91741.1| putative naphthoate synthase [Oryza sativa (japonica
cultivar-group)]
Length = 331
Score = 215 bits (547), Expect = 3e-55
Identities = 102/120 (85%), Positives = 112/120 (93%)
Frame = -1
Query: 499 YGSSIMSRLVGPKKAREMWFLTRFYTAVEADKMGLVNTVVPLENLEKETIKWCREILRNS 320
YG+SIMSRLVGPKKAREMWFL+RFYTA EAD+MGLVN VVPL +LE+ET+KWCR+ILRNS
Sbjct: 212 YGTSIMSRLVGPKKAREMWFLSRFYTADEADRMGLVNVVVPLADLERETVKWCRKILRNS 271
Query: 319 PTAIRVLKSALNAVDDGHAGLQEIGGNATLIFYGTEEANEGKTAYMQRRPPDFFKFPRRP 140
PTAIRVLKSALNA DDGHAGLQE+GGNATLIFYGTEEA EGK AYM+RR PDF KFPR+P
Sbjct: 272 PTAIRVLKSALNAADDGHAGLQELGGNATLIFYGTEEAKEGKNAYMERRRPDFSKFPRKP 331
>ref|NP_176255.1| hypothetical protein; protein id: At1g60550.1 [Arabidopsis
thaliana] gi|25291844|pir||G96630 probable enoyl-CoA
hydratase/isomerase [imported] - Arabidopsis thaliana
gi|2462733|gb|AAB71952.1| Putative enoyl-CoA
hydratase/isomerase [Arabidopsis thaliana]
Length = 378
Score = 205 bits (521), Expect = 3e-52
Identities = 104/147 (70%), Positives = 114/147 (76%), Gaps = 27/147 (18%)
Frame = -1
Query: 499 YGSSIMSRLV---------------------------GPKKAREMWFLTRFYTAVEADKM 401
YGSSIMSRLV GPKKAREMWF+TRFYTA EA+KM
Sbjct: 232 YGSSIMSRLVIELTITAMQYPKSNKHRLIKVYECIQVGPKKAREMWFMTRFYTASEAEKM 291
Query: 400 GLVNTVVPLENLEKETIKWCREILRNSPTAIRVLKSALNAVDDGHAGLQEIGGNATLIFY 221
GL+NTVVPLE+LEKET+KWCREILRNSPTAIRVLK+ALNAVDDGHAGLQ +GG+ATL+FY
Sbjct: 292 GLINTVVPLEDLEKETVKWCREILRNSPTAIRVLKAALNAVDDGHAGLQGLGGDATLLFY 351
Query: 220 GTEEANEGKTAYMQRRPPDFFKFPRRP 140
GTEEA EG+TAYM RRPPDF KF RRP
Sbjct: 352 GTEEATEGRTAYMHRRPPDFSKFHRRP 378
>ref|NP_797310.1| naphthoate synthase [Vibrio parahaemolyticus RIMD 2210633]
gi|28805918|dbj|BAC59194.1| naphthoate synthase [Vibrio
parahaemolyticus]
Length = 292
Score = 167 bits (423), Expect = 6e-41
Identities = 78/120 (65%), Positives = 99/120 (82%)
Frame = -1
Query: 499 YGSSIMSRLVGPKKAREMWFLTRFYTAVEADKMGLVNTVVPLENLEKETIKWCREILRNS 320
+G+S M+R+VG KKARE+WFL RFY A EA MGLVNTVVPLE+LEKET++WCRE+L++S
Sbjct: 173 WGASYMARIVGQKKAREIWFLCRFYNAQEALDMGLVNTVVPLEDLEKETVRWCREVLQHS 232
Query: 319 PTAIRVLKSALNAVDDGHAGLQEIGGNATLIFYGTEEANEGKTAYMQRRPPDFFKFPRRP 140
P A+R LK+ALNA DG AGLQE+ GNAT++FY T+E EG+ A+ ++R PDF KFPR P
Sbjct: 233 PMALRCLKAALNADCDGQAGLQELAGNATMMFYMTDEGQEGRNAFNEKRRPDFDKFPRNP 292
>ref|NP_231607.1| naphthoate synthase [Vibrio cholerae] gi|11269132|pir||G82134
naphthoate synthase VC1973 [imported] - Vibrio cholerae
(strain N16961 serogroup O1) gi|9656513|gb|AAF95121.1|
naphthoate synthase [Vibrio cholerae]
Length = 296
Score = 167 bits (422), Expect = 8e-41
Identities = 78/120 (65%), Positives = 98/120 (81%)
Frame = -1
Query: 499 YGSSIMSRLVGPKKAREMWFLTRFYTAVEADKMGLVNTVVPLENLEKETIKWCREILRNS 320
+G+S M+R+VG KKARE+WFL RFY A EA MGLVNTVVP+E LE+ET++WCRE+L++S
Sbjct: 177 WGASYMARIVGQKKAREIWFLCRFYNAQEALDMGLVNTVVPVEELERETVRWCREVLQHS 236
Query: 319 PTAIRVLKSALNAVDDGHAGLQEIGGNATLIFYGTEEANEGKTAYMQRRPPDFFKFPRRP 140
P AIR LK+ALNA DG AGLQE+ GNAT++FY TEE EG+ A+ ++R PDF KFPR P
Sbjct: 237 PMAIRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNEKRRPDFNKFPRNP 296
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,060,864
Number of Sequences: 1393205
Number of extensions: 9868810
Number of successful extensions: 23318
Number of sequences better than 10.0: 436
Number of HSP's better than 10.0 without gapping: 22441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23245
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
