Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015316A_C01 KMC015316A_c01
(526 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO65148.1| putative vacuolar ATP synthase [Gossypium barbade... 154 6e-37
gb|AAO65147.1| putative vacuolar ATP synthase [Gossypium barbade... 153 1e-36
dbj|BAB21282.1| putative H+-transporting ATPase [Oryza sativa (j... 151 5e-36
ref|NP_194979.1| H+-transporting ATPase - like protein; protein ... 150 9e-36
ref|NP_180132.1| putative vacuolar ATP synthase proteolipid subu... 150 9e-36
>gb|AAO65148.1| putative vacuolar ATP synthase [Gossypium barbadense]
Length = 105
Score = 154 bits (389), Expect = 6e-37
Identities = 78/79 (98%), Positives = 79/79 (99%)
Frame = -1
Query: 526 PESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALG 347
PESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALG
Sbjct: 25 PESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALG 84
Query: 346 LFGVIVGIIMSAQATWPSK 290
LFGVIVGIIMSAQATWP+K
Sbjct: 85 LFGVIVGIIMSAQATWPAK 103
>gb|AAO65147.1| putative vacuolar ATP synthase [Gossypium barbadense]
Length = 113
Score = 153 bits (386), Expect = 1e-36
Identities = 77/79 (97%), Positives = 79/79 (99%)
Frame = -1
Query: 526 PESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALG 347
PE+LRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALG
Sbjct: 25 PETLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALG 84
Query: 346 LFGVIVGIIMSAQATWPSK 290
LFGVIVGIIMSAQATWP+K
Sbjct: 85 LFGVIVGIIMSAQATWPAK 103
>dbj|BAB21282.1| putative H+-transporting ATPase [Oryza sativa (japonica
cultivar-group)]
Length = 176
Score = 151 bits (381), Expect = 5e-36
Identities = 75/79 (94%), Positives = 79/79 (99%)
Frame = -1
Query: 526 PESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALG 347
PESLRAGYAIFASG+IVGFANLVCG+CVGIIGSSCALSDAQNSSLFVKILVIEIFGSALG
Sbjct: 97 PESLRAGYAIFASGLIVGFANLVCGVCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALG 156
Query: 346 LFGVIVGIIMSAQATWPSK 290
LFGVIVGIIMS+QATWP+K
Sbjct: 157 LFGVIVGIIMSSQATWPAK 175
Score = 31.2 bits (69), Expect = 7.7
Identities = 23/68 (33%), Positives = 32/68 (46%), Gaps = 2/68 (2%)
Frame = -1
Query: 505 YAIFASGIIVGFANLVCGLCVGII--GSSCALSDAQNSSLFVKILVIEIFGSALGLFGVI 332
Y A GI V V G GI GSS + + + K L+ IF A+ ++GVI
Sbjct: 18 YTFSAIGIAVSIGVSVLGAAWGIFITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVI 77
Query: 331 VGIIMSAQ 308
V II+ +
Sbjct: 78 VAIILQTK 85
>ref|NP_194979.1| H+-transporting ATPase - like protein; protein id: At4g32530.1,
supported by cDNA: gi_14596150, supported by cDNA:
gi_18377457 [Arabidopsis thaliana]
gi|7436330|pir||T08586 probable H+-exporting ATPase (EC
3.6.3.6) 18K chain - Arabidopsis thaliana
gi|4914450|emb|CAB43690.1| H+-transporting ATPase-like
protein [Arabidopsis thaliana]
gi|7270157|emb|CAB79970.1| H+-transporting ATPase-like
protein [Arabidopsis thaliana]
gi|14596151|gb|AAK68803.1| H+-transporting ATPase-like
protein [Arabidopsis thaliana]
gi|18377458|gb|AAL66895.1| unknown protein [Arabidopsis
thaliana]
Length = 180
Score = 150 bits (379), Expect = 9e-36
Identities = 76/78 (97%), Positives = 78/78 (99%)
Frame = -1
Query: 523 ESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGL 344
ESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNS+LFVKILVIEIFGSALGL
Sbjct: 103 ESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSTLFVKILVIEIFGSALGL 162
Query: 343 FGVIVGIIMSAQATWPSK 290
FGVIVGIIMSAQATWP+K
Sbjct: 163 FGVIVGIIMSAQATWPTK 180
>ref|NP_180132.1| putative vacuolar ATP synthase proteolipid subunit; protein id:
At2g25610.1, supported by cDNA: 11111. [Arabidopsis
thaliana] gi|25290612|pir||E84650 hypothetical protein
At2g25610 [imported] - Arabidopsis thaliana
gi|4874301|gb|AAD31363.1| putative vacuolar ATP synthase
proteolipid subunit [Arabidopsis thaliana]
gi|21536776|gb|AAM61108.1| putative vacuolar ATP
synthase proteolipid subunit [Arabidopsis thaliana]
Length = 178
Score = 150 bits (379), Expect = 9e-36
Identities = 76/78 (97%), Positives = 78/78 (99%)
Frame = -1
Query: 523 ESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGL 344
ESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNS+LFVKILVIEIFGSALGL
Sbjct: 101 ESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSTLFVKILVIEIFGSALGL 160
Query: 343 FGVIVGIIMSAQATWPSK 290
FGVIVGIIMSAQATWP+K
Sbjct: 161 FGVIVGIIMSAQATWPTK 178
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,559,702
Number of Sequences: 1393205
Number of extensions: 9136112
Number of successful extensions: 26664
Number of sequences better than 10.0: 133
Number of HSP's better than 10.0 without gapping: 22023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26230
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
