Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015276A_C01 KMC015276A_c01
(547 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O22466|MSI1_LYCES WD-40 repeat protein MSI1 gi|7444288|pir||T... 150 1e-35
gb|AAL33648.1|AF440219_1 MSI type nucleosome/chromatin assembly ... 149 3e-35
ref|NP_200631.1| WD-40 repeat protein MSI1 (sp|O22467); also hig... 145 2e-34
ref|NP_033056.1| retinoblastoma binding protein 4 [Mus musculus]... 122 3e-27
ref|XP_225448.1| similar to Chromatin assembly factor 1 subunit ... 121 5e-27
>sp|O22466|MSI1_LYCES WD-40 repeat protein MSI1 gi|7444288|pir||T04324 G1/S transition
control protein-binding protein MSI1 - tomato
gi|2394227|gb|AAB70241.1| WD-40 repeat protein
[Lycopersicon esculentum]
Length = 424
Score = 150 bits (378), Expect = 1e-35
Identities = 68/72 (94%), Positives = 70/72 (96%)
Frame = -2
Query: 546 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDHILQIWQMAENI 367
RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAED+ILQIWQMAENI
Sbjct: 349 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENI 408
Query: 366 YHDEDDLPEESA 331
YHDEDDLP + A
Sbjct: 409 YHDEDDLPGDDA 420
>gb|AAL33648.1|AF440219_1 MSI type nucleosome/chromatin assembly factor C [Zea mays]
Length = 431
Score = 149 bits (375), Expect = 3e-35
Identities = 69/77 (89%), Positives = 73/77 (94%), Gaps = 2/77 (2%)
Frame = -2
Query: 546 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDHILQIWQMAENI 367
RID+EQTPEDAEDGPPEL+FIHGGHTSKISDFSWNPCEDWVVASVAED+ILQIWQMAENI
Sbjct: 355 RIDQEQTPEDAEDGPPELMFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENI 414
Query: 366 YHDEDDLP--EESAKAS 322
YHDEDDLP +E AK S
Sbjct: 415 YHDEDDLPISDEPAKTS 431
>ref|NP_200631.1| WD-40 repeat protein MSI1 (sp|O22467); also highly similar to G1/S
transition control protein-binding protein RbAp46;
protein id: At5g58230.1, supported by cDNA: gi_16649008
[Arabidopsis thaliana] gi|3122387|sp|O22467|MSI1_ARATH
WD-40 repeat protein MSI1 gi|2394229|gb|AAB70242.1|
WD-40 repeat protein [Arabidopsis thaliana]
gi|8777324|dbj|BAA96914.1| WD-40 repeat protein MSI1
[Arabidopsis thaliana] gi|16649009|gb|AAL24356.1| WD-40
repeat protein MSI1 [Arabidopsis thaliana]
gi|21387123|gb|AAM47965.1| WD-40 repeat protein MSI1
[Arabidopsis thaliana]
Length = 424
Score = 145 bits (367), Expect = 2e-34
Identities = 68/76 (89%), Positives = 72/76 (94%), Gaps = 1/76 (1%)
Frame = -2
Query: 546 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDHILQIWQMAENI 367
RIDEEQT EDAEDGPPELLFIHGGHTSKISDFSWNPCEDWV++SVAED+ILQIWQMAENI
Sbjct: 349 RIDEEQTVEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENI 408
Query: 366 YHDEDDLP-EESAKAS 322
YHDEDD P EE +KAS
Sbjct: 409 YHDEDDAPGEEPSKAS 424
>ref|NP_033056.1| retinoblastoma binding protein 4 [Mus musculus]
gi|2494893|sp|Q60972|RBB4_MOUSE Chromatin assembly
factor 1 subunit C (CAF-1 subunit C) (Chromatin assembly
factor I p48 subunit) (CAF-I 48 kDa subunit) (CAF-Ip48)
(Retinoblastoma binding protein p48)
(Retinoblastoma-binding protein 4) (RBBP-4)
gi|2137734|pir||I49366 G1/S transition control
protein-binding protein RbAp48 - mouse
gi|1016275|gb|AAC52275.1| retinoblastoma-binding protein
mRbAp48 gi|1585656|prf||2201425A retinoblastoma-binding
protein
Length = 461
Score = 122 bits (306), Expect = 3e-27
Identities = 56/83 (67%), Positives = 65/83 (77%), Gaps = 4/83 (4%)
Frame = -2
Query: 546 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDHILQIWQMAENI 367
+I EEQ+PEDAEDGPPELLFIHGGHT+KISDFSWNP E WV+ SV+ED+I+Q+WQMAENI
Sbjct: 349 KIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENI 408
Query: 366 YHDEDDL----PEESAKAS*CNC 310
Y+DED PE C C
Sbjct: 409 YNDEDPEGSVDPEGQGSRRVCTC 431
Score = 34.7 bits (78), Expect = 0.77
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 486 IHGGHTSKISDFSWNPCEDWVVASVAEDHILQIWQMAEN 370
I GHT+ + D SW+ + + SVA+D L IW N
Sbjct: 222 IFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSN 260
>ref|XP_225448.1| similar to Chromatin assembly factor 1 subunit C (CAF-1 subunit C)
(Chromatin assembly factor I p48 subunit) (CAF-I 48 kDa
subunit) (CAF-Ip48) (Retinoblastoma binding protein p48)
(Retinoblastoma-binding protein 4) (RBBP-4) (MSI1
protein homolog)... [Rattus norvegicus]
Length = 410
Score = 121 bits (304), Expect = 5e-27
Identities = 55/71 (77%), Positives = 64/71 (89%)
Frame = -2
Query: 546 RIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDHILQIWQMAENI 367
+I EEQ+PEDAEDGPPELLFIHGGHT+KISDFSWNP E WV+ SV+ED+I+Q+WQMAENI
Sbjct: 334 KIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENI 393
Query: 366 YHDEDDLPEES 334
Y+DED PE S
Sbjct: 394 YNDED--PEGS 402
Score = 34.7 bits (78), Expect = 0.77
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 486 IHGGHTSKISDFSWNPCEDWVVASVAEDHILQIWQMAEN 370
I GHT+ + D SW+ + + SVA+D L IW N
Sbjct: 207 IFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSN 245
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,030,941
Number of Sequences: 1393205
Number of extensions: 10958742
Number of successful extensions: 31172
Number of sequences better than 10.0: 234
Number of HSP's better than 10.0 without gapping: 29606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31130
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
