Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015256A_C01 KMC015256A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF35897.1|AF229849_1 pectin methylesterase isoform alpha [Vi... 157 1e-37
pir||T49241 pectinesterase-like protein - Arabidopsis thaliana g... 132 3e-30
ref|NP_192141.1| pectinesterase family; protein id: At4g02320.1 ... 132 3e-30
gb|AAN84553.1| methyl pectinesterase [Lolium perenne] 132 4e-30
dbj|BAB92768.1| putative pectinesterase 2.1 precursor [Oryza sat... 132 4e-30
>gb|AAF35897.1|AF229849_1 pectin methylesterase isoform alpha [Vigna radiata]
Length = 277
Score = 157 bits (396), Expect = 1e-37
Identities = 72/93 (77%), Positives = 80/93 (85%)
Frame = -1
Query: 592 KLYSRTVFLKSYMEDLIDPAGWLEWNDTFALDTLYYGEYQNRGPGSNTSARVKWGGYRVI 413
K+YSRTVFL S MEDLI+PAGWLEWN TFALDTLYYGEY NRGPG+NTS RV W GYRVI
Sbjct: 185 KMYSRTVFLNSLMEDLIEPAGWLEWNGTFALDTLYYGEYNNRGPGANTSGRVTWPGYRVI 244
Query: 412 NSSTEASQFTVGQFIQGSDWLNSTGIPFYFNLS 314
+STEASQFTV FIQG++WLNS GIPF+ L+
Sbjct: 245 TNSTEASQFTVQNFIQGNEWLNSYGIPFFSGLT 277
>pir||T49241 pectinesterase-like protein - Arabidopsis thaliana
gi|7649367|emb|CAB89048.1| pectinesterase-like protein
[Arabidopsis thaliana] gi|17979141|gb|AAL49828.1|
putative pectinesterase [Arabidopsis thaliana]
gi|20465719|gb|AAM20328.1| putative pectinesterase
[Arabidopsis thaliana]
Length = 527
Score = 132 bits (333), Expect = 3e-30
Identities = 60/92 (65%), Positives = 70/92 (75%)
Frame = -1
Query: 592 KLYSRTVFLKSYMEDLIDPAGWLEWNDTFALDTLYYGEYQNRGPGSNTSARVKWGGYRVI 413
KLYSRTVF+++YM D I+P GWLEWN FALDTLYYGEY N GPG++ RVKW GY V+
Sbjct: 434 KLYSRTVFMQNYMSDAINPVGWLEWNGNFALDTLYYGEYMNSGPGASLDRRVKWPGYHVL 493
Query: 412 NSSTEASQFTVGQFIQGSDWLNSTGIPFYFNL 317
N+S EA+ FTV Q IQG+ WL STGI F L
Sbjct: 494 NTSAEANNFTVSQLIQGNLWLPSTGITFIAGL 525
>ref|NP_192141.1| pectinesterase family; protein id: At4g02320.1 [Arabidopsis
thaliana] gi|7447365|pir||T01318 pectinesterase homolog
T14P8.1 - Arabidopsis thaliana gi|3193288|gb|AAC19272.1|
similar to bacterial and fungi pectinesterases
[Arabidopsis thaliana] gi|7268992|emb|CAB80725.1|
pectinesterase-like protein [Arabidopsis thaliana]
Length = 518
Score = 132 bits (332), Expect = 3e-30
Identities = 58/92 (63%), Positives = 74/92 (80%)
Frame = -1
Query: 592 KLYSRTVFLKSYMEDLIDPAGWLEWNDTFALDTLYYGEYQNRGPGSNTSARVKWGGYRVI 413
+LYSRTV +KS+++DL+DPAGWL+W D FAL+TLYYGEY N GPGSN + RV+W G++ I
Sbjct: 427 QLYSRTVIMKSFIDDLVDPAGWLKWKDDFALETLYYGEYMNEGPGSNMTNRVQWPGFKRI 486
Query: 412 NSSTEASQFTVGQFIQGSDWLNSTGIPFYFNL 317
+ EASQF+VG FI G+ WLNST IPF +L
Sbjct: 487 ETVEEASQFSVGPFIDGNKWLNSTRIPFTLDL 518
>gb|AAN84553.1| methyl pectinesterase [Lolium perenne]
Length = 226
Score = 132 bits (331), Expect = 4e-30
Identities = 60/88 (68%), Positives = 71/88 (80%)
Frame = -1
Query: 592 KLYSRTVFLKSYMEDLIDPAGWLEWNDTFALDTLYYGEYQNRGPGSNTSARVKWGGYRVI 413
K YSRTV+L+S ++ ++DP GWLEW+ TFALDTLYYGEYQN G G++TS RVKW GYRVI
Sbjct: 135 KQYSRTVYLQSELDSVVDPKGWLEWDGTFALDTLYYGEYQNTGAGASTSNRVKWKGYRVI 194
Query: 412 NSSTEASQFTVGQFIQGSDWLNSTGIPF 329
+SS+EAS FTVG FI G WL T IPF
Sbjct: 195 SSSSEASTFTVGSFIDGDVWLAGTSIPF 222
>dbj|BAB92768.1| putative pectinesterase 2.1 precursor [Oryza sativa (japonica
cultivar-group)]
Length = 295
Score = 132 bits (331), Expect = 4e-30
Identities = 59/92 (64%), Positives = 72/92 (78%)
Frame = -1
Query: 592 KLYSRTVFLKSYMEDLIDPAGWLEWNDTFALDTLYYGEYQNRGPGSNTSARVKWGGYRVI 413
K YSRTVF++S ++ +++PAGWLEW+ FALDTLYYGEYQN GPG++TS RVKW GYRVI
Sbjct: 204 KQYSRTVFMQSELDSVVNPAGWLEWSGNFALDTLYYGEYQNTGPGASTSNRVKWKGYRVI 263
Query: 412 NSSTEASQFTVGQFIQGSDWLNSTGIPFYFNL 317
S++EAS FTVG FI G WL T +PF L
Sbjct: 264 TSASEASTFTVGNFIDGDVWLAGTSVPFTVGL 295
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 500,487,155
Number of Sequences: 1393205
Number of extensions: 10745540
Number of successful extensions: 25108
Number of sequences better than 10.0: 198
Number of HSP's better than 10.0 without gapping: 24163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24975
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
