Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015200A_C01 KMC015200A_c01
(601 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188634.1| membrane import protein, putative; protein id: ... 215 3e-55
ref|NP_175457.1| hypothetical protein; protein id: At1g50400.1 [... 186 2e-46
dbj|BAB03165.1| membrane import protein-like [Arabidopsis thaliana] 149 4e-35
dbj|BAA88180.1| unnamed protein product [Oryza sativa (japonica ... 147 1e-34
gb|AAD50049.2|AC007980_14 Hypothetical protein [Arabidopsis thal... 125 4e-28
>ref|NP_188634.1| membrane import protein, putative; protein id: At3g20000.1,
supported by cDNA: gi_15292982 [Arabidopsis thaliana]
gi|13632086|sp|Q9LHE5|OM40_ARATH Probable mitochondrial
import receptor subunit TOM40 homolog (Translocase of
outer membrane 40 kDa subunit homolog)
gi|15292983|gb|AAK93602.1| putative membrane import
protein [Arabidopsis thaliana]
gi|21436305|gb|AAM51291.1| putative membrane import
protein [Arabidopsis thaliana]
Length = 309
Score = 215 bits (548), Expect = 3e-55
Identities = 108/157 (68%), Positives = 127/157 (80%), Gaps = 7/157 (4%)
Frame = +1
Query: 148 VPPPTA------TKPDEKTDYFNLPCPIPFEELHREAMMSLKPDLFEGMRFDFTKMLNQK 309
+PP TA TK DEK DY NLP P+P+EELHREA+MSLK D FEG+RFDFT+ LNQK
Sbjct: 5 LPPLTAAQVDAKTKVDEKVDYSNLPSPVPYEELHREALMSLKSDNFEGLRFDFTRALNQK 64
Query: 310 FSLNHSVLMGPTEIPSQSTE-TIKIPTAHYEFGSTFIDHPKLLLWGRVMTDGRLNARVKC 486
FSL+HSV+MGPTE+P+QS E TIKIPTAHYEFG+ + D PKLLL GRVMTDGRLNAR+K
Sbjct: 65 FSLSHSVMMGPTEVPAQSPETTIKIPTAHYEFGANYYD-PKLLLIGRVMTDGRLNARLKA 123
Query: 487 DLSENVTFKANAQLSNEPHMSHGMMNFDYKGSDYRSQ 597
DL++ + KANA ++NE HMS M NFDY GSDYR+Q
Sbjct: 124 DLTDKLVVKANALITNEEHMSQAMFNFDYMGSDYRAQ 160
>ref|NP_175457.1| hypothetical protein; protein id: At1g50400.1 [Arabidopsis
thaliana]
Length = 310
Score = 186 bits (472), Expect = 2e-46
Identities = 93/146 (63%), Positives = 115/146 (78%), Gaps = 2/146 (1%)
Frame = +1
Query: 166 TKPDEKTDYFNLPCPIPFEELHREAMMSLKPDLFEGMRFDFTKMLNQKFSLNHSVLMGPT 345
TK DEK DY NLPCP+ +EEL+REA M+LKP+LFEG R D+ K LNQKF L+HS+LMGPT
Sbjct: 17 TKLDEKVDYSNLPCPVLYEELNREATMALKPELFEGFRLDYNKSLNQKFFLSHSILMGPT 76
Query: 346 EI--PSQSTETIKIPTAHYEFGSTFIDHPKLLLWGRVMTDGRLNARVKCDLSENVTFKAN 519
E+ P+ S+E IKIPTA+Y+FG+ FID PKL L GR+ TDGRLNAR K DL++N + KAN
Sbjct: 77 EVPNPTPSSEIIKIPTANYDFGAGFID-PKLYLIGRITTDGRLNARAKFDLTDNFSVKAN 135
Query: 520 AQLSNEPHMSHGMMNFDYKGSDYRSQ 597
A L++E S G + DYKGSDYR+Q
Sbjct: 136 ALLTDEEDKSQGHLVIDYKGSDYRTQ 161
>dbj|BAB03165.1| membrane import protein-like [Arabidopsis thaliana]
Length = 290
Score = 149 bits (375), Expect = 4e-35
Identities = 86/170 (50%), Positives = 101/170 (58%), Gaps = 20/170 (11%)
Frame = +1
Query: 148 VPPPTA------TKPDEKTDYFNLPCPIPFEELHREAMMSLKPDLFEGMRFDFTKMLNQK 309
+PP TA TK DEK DY NLP P+P+EELHREA+MSLK D FEG+RFDFT+ LNQK
Sbjct: 5 LPPLTAAQVDAKTKVDEKVDYSNLPSPVPYEELHREALMSLKSDNFEGLRFDFTRALNQK 64
Query: 310 FSLNH-------------SVLMGPTEIPSQSTE-TIKIPTAHYEFGSTFIDHPKLLLWGR 447
FSL+H SV+MGPTE+P+QS E TIKIPTAHYEFG+ + D PK
Sbjct: 65 FSLSHRYVACIYSYCCTISVMMGPTEVPAQSPETTIKIPTAHYEFGANYYD-PK------ 117
Query: 448 VMTDGRLNARVKCDLSENVTFKANAQLSNEPHMSHGMMNFDYKGSDYRSQ 597
++NE HMS M NFDY GSDYR+Q
Sbjct: 118 --------------------------ITNEEHMSQAMFNFDYMGSDYRAQ 141
>dbj|BAA88180.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 290
Score = 147 bits (371), Expect = 1e-34
Identities = 81/175 (46%), Positives = 98/175 (55%), Gaps = 16/175 (9%)
Frame = +1
Query: 124 FSSVAMATVPPPT---ATKPDEKTDYFNLPCPIPFEELHREAMMSLKPDLFEGMRFDFTK 294
F A A PPP A +EK DY NLPCP+P+EE+ REA MSLKPD+FEG+RFDFTK
Sbjct: 23 FVDPAAAAAPPPAEKDAAADEEKVDYMNLPCPVPYEEIQREAFMSLKPDVFEGLRFDFTK 82
Query: 295 MLNQKFSLNH-------------SVLMGPTEIPSQSTETIKIPTAHYEFGSTFIDHPKLL 435
MLN F L+H SV MG E+PSQ + IK+PT++YEFG+ F+D PK
Sbjct: 83 MLNPFFGLSHSGFGCIVTILVRLSVSMGSMELPSQGADVIKVPTSNYEFGANFMD-PK-- 139
Query: 436 LWGRVMTDGRLNARVKCDLSENVTFKANAQLSNEPHMSHGMMNFDYKGSDYRSQF 600
L+NEPH S GM +FDYKG D+RSQF
Sbjct: 140 ------------------------------LTNEPHYSQGMFSFDYKGKDFRSQF 164
>gb|AAD50049.2|AC007980_14 Hypothetical protein [Arabidopsis thaliana]
Length = 286
Score = 125 bits (314), Expect = 4e-28
Identities = 73/154 (47%), Positives = 91/154 (58%), Gaps = 10/154 (6%)
Frame = +1
Query: 166 TKPDEKTDYFNLPCPIPFEELHREAMMSLKPDLFEGMRFDFTKMLNQKFSLNH------- 324
TK DEK DY NLPCP+ +EEL+REA M+LKP+LFEG R D+ K LNQKF L+H
Sbjct: 17 TKLDEKVDYSNLPCPVLYEELNREATMALKPELFEGFRLDYNKSLNQKFFLSHSLCIDAS 76
Query: 325 -SVLMGPTEI--PSQSTETIKIPTAHYEFGSTFIDHPKLLLWGRVMTDGRLNARVKCDLS 495
S+LMGPTE+ P+ S+E IKIPTA+Y+FG+ FID PK
Sbjct: 77 NSILMGPTEVPNPTPSSEIIKIPTANYDFGAGFID-PK---------------------- 113
Query: 496 ENVTFKANAQLSNEPHMSHGMMNFDYKGSDYRSQ 597
L++E S G + DYKGSDYR+Q
Sbjct: 114 ----------LTDEEDKSQGHLVIDYKGSDYRTQ 137
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 523,251,386
Number of Sequences: 1393205
Number of extensions: 12164736
Number of successful extensions: 47695
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 40512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46550
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
