Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015195A_C01 KMC015195A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568832.1| expressed protein; protein id: At5g55940.1, sup... 110 1e-23
gb|AAM64789.1| unknown [Arabidopsis thaliana] 110 1e-23
gb|AAN01224.1| chlorophyll antenna size regulatory protein [Chla... 45 7e-04
ref|NP_701268.1| hypothetical protein, conserved [Plasmodium fal... 44 0.001
ref|NP_006058.1| neighbor of COX4 [Homo sapiens] gi|18202040|sp|... 43 0.003
>ref|NP_568832.1| expressed protein; protein id: At5g55940.1, supported by cDNA:
33108., supported by cDNA: gi_18086570 [Arabidopsis
thaliana] gi|18202899|sp|Q9FG71|U172_ARATH Hypothetical
protein At5g55940 gi|9758214|dbj|BAB08659.1|
gene_id:MYN21.5~unknown protein [Arabidopsis thaliana]
gi|18086571|gb|AAL57709.1| AT5g55940/MYN21_5
[Arabidopsis thaliana] gi|21689597|gb|AAM67420.1|
AT5g55940/MYN21_5 [Arabidopsis thaliana]
Length = 208
Score = 110 bits (275), Expect = 1e-23
Identities = 52/77 (67%), Positives = 62/77 (79%)
Frame = -2
Query: 574 ERGAVMQVSNISLYVRDASKNWKLVPSDGNSRFSLKEPSANLVLSDYISSEKWNNIVDFD 395
ER VMQ L V+DASKNW++V +DG S+ LKEPSAN+VLSDYISSEKW ++ D D
Sbjct: 137 ERSPVMQ-----LCVKDASKNWRVVGADGGSKLLLKEPSANVVLSDYISSEKWKDVTDVD 191
Query: 394 DHLDDLSKDWLNPGLFN 344
DHLDD++KDWLNPGLFN
Sbjct: 192 DHLDDVTKDWLNPGLFN 208
>gb|AAM64789.1| unknown [Arabidopsis thaliana]
Length = 206
Score = 110 bits (275), Expect = 1e-23
Identities = 52/77 (67%), Positives = 62/77 (79%)
Frame = -2
Query: 574 ERGAVMQVSNISLYVRDASKNWKLVPSDGNSRFSLKEPSANLVLSDYISSEKWNNIVDFD 395
ER VMQ L V+DASKNW++V +DG S+ LKEPSAN+VLSDYISSEKW ++ D D
Sbjct: 135 ERSPVMQ-----LCVKDASKNWRVVGADGGSKLLLKEPSANVVLSDYISSEKWKDVTDVD 189
Query: 394 DHLDDLSKDWLNPGLFN 344
DHLDD++KDWLNPGLFN
Sbjct: 190 DHLDDVTKDWLNPGLFN 206
>gb|AAN01224.1| chlorophyll antenna size regulatory protein [Chlamydomonas
reinhardtii] gi|22536150|gb|AAN01225.1| chlorophyll
antenna size regulatory protein [Chlamydomonas
reinhardtii]
Length = 213
Score = 45.1 bits (105), Expect = 7e-04
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = -2
Query: 538 LYVRDASKNWKLVPSDGNSRFSLKEPSANLVLSDYI---SSEKWNNIVDFDDHLDDLSKD 368
L+ +D SK WK +DG +LK + ++ K + DF++HLDD KD
Sbjct: 136 LFSKDGSKGWKRASADGGE-LALKNADWKKLREEFFVMFKQLKHRTLHDFEEHLDDAGKD 194
Query: 367 WLNPG 353
WLN G
Sbjct: 195 WLNKG 199
>ref|NP_701268.1| hypothetical protein, conserved [Plasmodium falciparum 3D7]
gi|23496335|gb|AAN35992.1|AE014842_14 hypothetical
protein, conserved [Plasmodium falciparum 3D7]
Length = 198
Score = 43.9 bits (102), Expect = 0.001
Identities = 23/70 (32%), Positives = 40/70 (56%), Gaps = 3/70 (4%)
Frame = -2
Query: 544 ISLYVRDASKNWK---LVPSDGNSRFSLKEPSANLVLSDYISSEKWNNIVDFDDHLDDLS 374
+++++++ NW+ +V S+ N F K IS++ + NI DFDDHL+ +
Sbjct: 136 LNIFMKNDKSNWEKGNVVISNKNKEFLKKN----------ISNQHYLNIYDFDDHLNSMK 185
Query: 373 KDWLNPGLFN 344
D++NP LFN
Sbjct: 186 CDFMNPDLFN 195
>ref|NP_006058.1| neighbor of COX4 [Homo sapiens] gi|18202040|sp|O43402|NOC4_HUMAN
Neighbor of COX4 gi|2738488|gb|AAB94489.1| COX4AL gene
product [Homo sapiens]
gi|12655227|gb|AAH01472.1|AAH01472 neighbor of COX4
[Homo sapiens] gi|13543455|gb|AAH05886.1|AAH05886
neighbor of COX4 [Homo sapiens]
gi|13938587|gb|AAH07445.1|AAH07445 neighbor of COX4
[Homo sapiens] gi|18044265|gb|AAH20250.1|AAH20250
neighbor of COX4 [Homo sapiens]
Length = 210
Score = 42.7 bits (99), Expect = 0.003
Identities = 17/45 (37%), Positives = 25/45 (54%)
Frame = -2
Query: 463 PSANLVLSDYISSEKWNNIVDFDDHLDDLSKDWLNPGLFN*CQHL 329
P A + + + S + +VDFD+HLDD+ DW NP + HL
Sbjct: 165 PEAQRISASLLDSRSYETLVDFDNHLDDIRNDWTNPEINKAVLHL 209
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,944,359
Number of Sequences: 1393205
Number of extensions: 10476017
Number of successful extensions: 28576
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 27045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28540
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
