Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015180A_C01 KMC015180A_c01
(536 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA39691.1| GLP_741_25710_4783 [Giardia lamblia ATCC 50803] 34 1.3
ref|NP_191073.1| ABC transporter family protein; protein id: At3... 33 2.2
ref|NP_539542.1| Hypothetical Protein [Brucella melitensis] gi|2... 32 3.7
gb|AAG44040.1| NADH dehydrogenase subunit F [Astronia macrophylla] 32 4.8
gb|AAF16523.1|AF191043_2 A5 homolog [porcine lymphotropic herpes... 32 4.8
>gb|EAA39691.1| GLP_741_25710_4783 [Giardia lamblia ATCC 50803]
Length = 6975
Score = 33.9 bits (76), Expect = 1.3
Identities = 20/56 (35%), Positives = 30/56 (52%), Gaps = 1/56 (1%)
Frame = +3
Query: 330 P*HCRIRASLLYYRILSLVTEGNDAGNCKRPL-SFVSLYLFPSVKGYTFIICLTCL 494
P + I LL+Y++L +V+ ND C PL SF S Y+ P + G+ + CL
Sbjct: 3461 PIYSEILDKLLFYKLLFIVSPINDGPACNSPLKSFFSAYV-PLITGHPVVFDQPCL 3515
>ref|NP_191073.1| ABC transporter family protein; protein id: At3g55130.1, supported
by cDNA: gi_15028218, supported by cDNA: gi_19310774
[Arabidopsis thaliana] gi|11277386|pir||T47652 ABC
transporter-like protein - Arabidopsis thaliana
gi|7019646|emb|CAB75747.1| ABC transporter-like protein
[Arabidopsis thaliana] gi|15028219|gb|AAK76606.1|
putative ABC transporter protein [Arabidopsis thaliana]
gi|19310775|gb|AAL85118.1| putative ABC transporter
protein [Arabidopsis thaliana]
Length = 725
Score = 33.1 bits (74), Expect = 2.2
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = -2
Query: 211 LPNCCLCWYGFVKVNRMHFSVLIGAYFVGE----FYWIWCPLYSLLEFPH 74
+PN LC+ V + + + +L+ ++V FYW W S+L++P+
Sbjct: 574 VPNIMLCY--MVSITYLAYCLLLSGFYVNRDRIPFYWTWFHYISILKYPY 621
>ref|NP_539542.1| Hypothetical Protein [Brucella melitensis]
gi|23502250|ref|NP_698377.1| hypothetical protein
[Brucella suis 1330] gi|25525312|pir||AC3330
hypothetical protein BMEI0625 [imported] - Brucella
melitensis (strain 16M) gi|17982550|gb|AAL51806.1|
Hypothetical Protein [Brucella melitensis 16M]
gi|23348222|gb|AAN30292.1|AE014434_8 hypothetical
protein [Brucella suis 1330]
Length = 93
Score = 32.3 bits (72), Expect = 3.7
Identities = 13/47 (27%), Positives = 26/47 (54%)
Frame = -2
Query: 175 KVNRMHFSVLIGAYFVGEFYWIWCPLYSLLEFPHLFI*ILILRFLSC 35
++NR ++L + +G W+W P+YS + P + ++ F+SC
Sbjct: 38 QLNRKEGALLASPFILGVLCWVWSPIYSEQKEPKFY----VMFFVSC 80
>gb|AAG44040.1| NADH dehydrogenase subunit F [Astronia macrophylla]
Length = 328
Score = 32.0 bits (71), Expect = 4.8
Identities = 20/70 (28%), Positives = 36/70 (50%), Gaps = 3/70 (4%)
Frame = -2
Query: 265 EFVVFANINEPNICCFLPLPNCCLCWYGFVKVNRMHFSVLIGAYFVGEFYWIWCPLYSL- 89
+F + +N+ P+I P PN + WY F K FSV + + + ++++ P+YS
Sbjct: 238 DFDLLSNLLNPSINLLHPNPNNSMDWYEFFK--NAIFSVSLAFFGIFIAFFLYKPIYSSF 295
Query: 88 --LEFPHLFI 65
L +LF+
Sbjct: 296 KNLNLQNLFV 305
>gb|AAF16523.1|AF191043_2 A5 homolog [porcine lymphotropic herpesvirus 2]
gi|27452851|gb|AAO12355.1| hypothetical v-GCR [Porcine
lymphotropic herpesvirus 2]
Length = 304
Score = 32.0 bits (71), Expect = 4.8
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +3
Query: 366 YRILSLVTEGNDAGNCKRPLSFVSLYLFPSVKGYTFIICL 485
Y +LS EGN+A C++ +S SL L ++G FIICL
Sbjct: 159 YAVLSF--EGNEAFKCRQGISVESLKLKFILRGVYFIICL 196
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,396,260
Number of Sequences: 1393205
Number of extensions: 8422081
Number of successful extensions: 19980
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 19492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19969
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
