Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015169A_C01 KMC015169A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176259.1| hypothetical protein; protein id: At1g60600.1 [... 89 5e-17
gb|AAN64152.1| Hypothetical protein [Oryza sativa (japonica cult... 37 0.14
gb|ZP_00106231.1| hypothetical protein [Nostoc punctiforme] 34 1.5
ref|NP_484077.1| DHNA phythltransferase [Nostoc sp. PCC 7120] gi... 34 1.5
gb|AAK54088.2|AF362369_1 histidine kinase DhkG [Dictyostelium di... 33 3.4
>ref|NP_176259.1| hypothetical protein; protein id: At1g60600.1 [Arabidopsis
thaliana]
Length = 382
Score = 88.6 bits (218), Expect = 5e-17
Identities = 39/59 (66%), Positives = 49/59 (82%)
Frame = -2
Query: 582 LPLTCILLCTLTLPMGNLVVRFVQENHKDKSKIFMAKYFCVRLHALFGTALAFGMVLAR 406
LPL C L+C LTLP+GNLV +V+++HKD KIFMAKY+CVRLHAL G AL+ G+V+AR
Sbjct: 324 LPLPCTLMCFLTLPVGNLVSSYVEKHHKDNGKIFMAKYYCVRLHALLGAALSLGLVIAR 382
>gb|AAN64152.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 346
Score = 37.4 bits (85), Expect = 0.14
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = -2
Query: 585 ALPLTCILLCTLTLPMGNLVVRFVQENHKDKSKI 484
+LP C +LC LTLP+G VV +V +NH+ S +
Sbjct: 305 SLPSACTVLCALTLPVGKWVVDYVLKNHEVTSDL 338
>gb|ZP_00106231.1| hypothetical protein [Nostoc punctiforme]
Length = 298
Score = 33.9 bits (76), Expect = 1.5
Identities = 18/49 (36%), Positives = 25/49 (50%)
Frame = -2
Query: 564 LLCTLTLPMGNLVVRFVQENHKDKSKIFMAKYFCVRLHALFGTALAFGM 418
LL ++LP + R VQENH K+ K+ V +H F L FG+
Sbjct: 248 LLSWVSLPFAVKLCRHVQENHNQPDKVSNCKFIAVAVH--FWACLLFGL 294
>ref|NP_484077.1| DHNA phythltransferase [Nostoc sp. PCC 7120]
gi|25309507|pir||AI1810 DHNA phythltransferase
[imported] - Nostoc sp. (strain PCC 7120)
gi|17135011|dbj|BAB77557.1| DHNA phythltransferase
[Nostoc sp. PCC 7120]
Length = 309
Score = 33.9 bits (76), Expect = 1.5
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -2
Query: 564 LLCTLTLPMGNLVVRFVQENHKDKSKIFMAKYFCVRLHALFGTALAFGMVLARV 403
LL L+LP + R VQ NH K+ K+ V +H L G V+A V
Sbjct: 256 LLSWLSLPYAFKLCRHVQHNHNQPEKVSNCKFIAVAVHFWSCLLLGLGFVIAGV 309
>gb|AAK54088.2|AF362369_1 histidine kinase DhkG [Dictyostelium discoideum]
Length = 3432
Score = 32.7 bits (73), Expect = 3.4
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Frame = +2
Query: 293 RLASLTLLSTPLSSCNLIFS---QPNLQLNIGLDVNVELTTLAKTI 421
R ASLT STPLS+ L+F+ ++ +N L + ++LTT+ ++I
Sbjct: 531 RRASLTPTSTPLSASPLLFNTKKYADIDINTFLSIAIQLTTILESI 576
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 500,331,770
Number of Sequences: 1393205
Number of extensions: 10545376
Number of successful extensions: 22878
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 22303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22875
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
