Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015165A_C01 KMC015165A_c01
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564089.2| hypothetical protein; protein id: At1g19525.1, ... 80 1e-14
pir||A86328 protein F18O14.27 [imported] - Arabidopsis thaliana ... 80 1e-14
ref|ZP_00115257.1| hypothetical protein [Synechococcus sp. WH 8102] 32 6.5
gb|EAA29124.1| predicted protein [Neurospora crassa] 31 8.5
>ref|NP_564089.2| hypothetical protein; protein id: At1g19525.1, supported by cDNA:
gi_15450491, supported by cDNA: gi_16974462 [Arabidopsis
thaliana] gi|15450492|gb|AAK96539.1| At1g19520/F18O14_36
[Arabidopsis thaliana] gi|16974463|gb|AAL31235.1|
At1g19520/F18O14_36 [Arabidopsis thaliana]
Length = 266
Score = 80.5 bits (197), Expect = 1e-14
Identities = 39/72 (54%), Positives = 51/72 (70%)
Frame = -1
Query: 546 IQVSLCGMYARCKMEKKALPTLGVLEARKDELGPQEFQTIIQDLIEGGFQKHAQRMCKIM 367
+QVSLC MY+ + EKK L LGVLEA++D++GP EF +I L GGF+K A+RM K M
Sbjct: 173 LQVSLCCMYSGVRNEKKTLQALGVLEAKRDQMGPNEFDKVISALKRGGFEKDARRMYKYM 232
Query: 366 EAQGFTPSYELK 331
EA+ F PS L+
Sbjct: 233 EARKFLPSQRLQ 244
>pir||A86328 protein F18O14.27 [imported] - Arabidopsis thaliana
gi|8778424|gb|AAF79432.1|AC025808_14 F18O14.27
[Arabidopsis thaliana]
Length = 725
Score = 80.5 bits (197), Expect = 1e-14
Identities = 39/72 (54%), Positives = 51/72 (70%)
Frame = -1
Query: 546 IQVSLCGMYARCKMEKKALPTLGVLEARKDELGPQEFQTIIQDLIEGGFQKHAQRMCKIM 367
+QVSLC MY+ + EKK L LGVLEA++D++GP EF +I L GGF+K A+RM K M
Sbjct: 632 LQVSLCCMYSGVRNEKKTLQALGVLEAKRDQMGPNEFDKVISALKRGGFEKDARRMYKYM 691
Query: 366 EAQGFTPSYELK 331
EA+ F PS L+
Sbjct: 692 EARKFLPSQRLQ 703
>ref|ZP_00115257.1| hypothetical protein [Synechococcus sp. WH 8102]
Length = 577
Score = 31.6 bits (70), Expect = 6.5
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 171 INSTLYWLRMVNPA-NQRFLHKAVHLLITLQNNSSMALLMT 290
+ S W R+ +PA +RF AVHLL T +N ++A L T
Sbjct: 313 VGSGAVWQRLQDPAVRERFGSAAVHLLHTYRNRGALAALAT 353
>gb|EAA29124.1| predicted protein [Neurospora crassa]
Length = 760
Score = 31.2 bits (69), Expect = 8.5
Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 2/45 (4%)
Frame = -3
Query: 226 RKRWFAGLTILNQ*RVEFMLDDTLLVSQLYH--PYEFCHDYIFAS 98
R+ GL R+ +D+TL VSQLYH P++ HD + S
Sbjct: 134 RRHMNRGLVRFESVRLSGFVDETLQVSQLYHVLPHDVTHDNLVVS 178
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,766,964
Number of Sequences: 1393205
Number of extensions: 9929286
Number of successful extensions: 23143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23138
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
