Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015129A_C01 KMC015129A_c01
(643 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC10351.1| contains ESTs AU174016(S13261),D47643(S13261)~si... 91 1e-17
emb|CAD40830.1| OSJNBa0086B14.2 [Oryza sativa (japonica cultivar... 55 8e-07
pir||T09901 hypothetical protein T22A6.210 - Arabidopsis thalian... 54 1e-06
ref|NP_567701.1| putative protein; protein id: At4g24380.1, supp... 54 1e-06
gb|AAM63786.1| unknown [Arabidopsis thaliana] 54 1e-06
>dbj|BAC10351.1| contains ESTs AU174016(S13261),D47643(S13261)~similar to Oryza
sativa chromosome 4,OSJNBa0086B14.2~unknown protein
[Oryza sativa (japonica cultivar-group)]
Length = 247
Score = 90.9 bits (224), Expect = 1e-17
Identities = 41/62 (66%), Positives = 50/62 (80%)
Frame = -1
Query: 643 SVHFIGEKDWLKLPSEELASAFHKSLLIRHPQGHTVPRLDEVSTGQLRDWVAGILGEPKD 464
SVHFIGEKDWLK+PSEELA+AF ++IRHPQGHTVPRLDE S QL +W + IL + K+
Sbjct: 156 SVHFIGEKDWLKVPSEELAAAFEDPVIIRHPQGHTVPRLDEASVKQLSEWSSSILEDIKN 215
Query: 463 GE 458
+
Sbjct: 216 AD 217
>emb|CAD40830.1| OSJNBa0086B14.2 [Oryza sativa (japonica cultivar-group)]
Length = 245
Score = 55.1 bits (131), Expect = 8e-07
Identities = 24/43 (55%), Positives = 32/43 (73%)
Frame = -1
Query: 643 SVHFIGEKDWLKLPSEELASAFHKSLLIRHPQGHTVPRLDEVS 515
SVHF+G+ D+LK E+L ++ +IRHP+GHTVPRLDE S
Sbjct: 172 SVHFLGDTDFLKTHGEKLIESYVDPFIIRHPKGHTVPRLDEKS 214
>pir||T09901 hypothetical protein T22A6.210 - Arabidopsis thaliana
gi|5051780|emb|CAB45073.1| putative protein [Arabidopsis
thaliana] gi|7269288|emb|CAB79348.1| putative protein
[Arabidopsis thaliana]
Length = 208
Score = 54.3 bits (129), Expect = 1e-06
Identities = 29/87 (33%), Positives = 45/87 (51%)
Frame = -1
Query: 643 SVHFIGEKDWLKLPSEELASAFHKSLLIRHPQGHTVPRLDEVSTGQLRDWVAGILGEPKD 464
S+HF+GE D+LK +L ++ +++ HP+GHTVPRLDE S ++ ++ +
Sbjct: 135 SLHFLGETDFLKPYGTQLIESYKNPVVVHHPKGHTVPRLDEKSLEKVTAFIDTL------ 188
Query: 463 GEPKDGVPIGEHETRHEEKKSEEKGSK 383
EH E+K EE SK
Sbjct: 189 ----------EHLVMEEDKNGEENTSK 205
>ref|NP_567701.1| putative protein; protein id: At4g24380.1, supported by cDNA:
27155. [Arabidopsis thaliana]
gi|26451917|dbj|BAC43051.1| unknown protein [Arabidopsis
thaliana]
Length = 234
Score = 54.3 bits (129), Expect = 1e-06
Identities = 29/87 (33%), Positives = 45/87 (51%)
Frame = -1
Query: 643 SVHFIGEKDWLKLPSEELASAFHKSLLIRHPQGHTVPRLDEVSTGQLRDWVAGILGEPKD 464
S+HF+GE D+LK +L ++ +++ HP+GHTVPRLDE S ++ ++ +
Sbjct: 161 SLHFLGETDFLKPYGTQLIESYKNPVVVHHPKGHTVPRLDEKSLEKVTAFIDTL------ 214
Query: 463 GEPKDGVPIGEHETRHEEKKSEEKGSK 383
EH E+K EE SK
Sbjct: 215 ----------EHLVMEEDKNGEENTSK 231
>gb|AAM63786.1| unknown [Arabidopsis thaliana]
Length = 234
Score = 54.3 bits (129), Expect = 1e-06
Identities = 29/87 (33%), Positives = 45/87 (51%)
Frame = -1
Query: 643 SVHFIGEKDWLKLPSEELASAFHKSLLIRHPQGHTVPRLDEVSTGQLRDWVAGILGEPKD 464
S+HF+GE D+LK +L ++ +++ HP+GHTVPRLDE S ++ ++ +
Sbjct: 161 SLHFLGETDFLKPYGTQLIESYKNPVVVHHPKGHTVPRLDEKSLEKVTAFIDTL------ 214
Query: 463 GEPKDGVPIGEHETRHEEKKSEEKGSK 383
EH E+K EE SK
Sbjct: 215 ----------EHLVMEEDKNGEENTSK 231
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 536,827,766
Number of Sequences: 1393205
Number of extensions: 12254924
Number of successful extensions: 41303
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 38449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41106
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
