Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015113A_C01 KMC015113A_c01
(515 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC24588.1| late embryogenesis-like protein [Prunus armeniaca] 140 7e-33
ref|NP_181934.1| similar to late embryogenesis abundant proteins... 119 3e-26
gb|AAM64433.1| similar to late embryogenesis abundant proteins [... 118 5e-26
ref|NP_704193.1| ubiquitin carboxyl-terminal hydrolase, putative... 33 1.5
ref|XP_206758.1| hypothetical protein XP_206758 [Mus musculus] 31 7.3
>gb|AAC24588.1| late embryogenesis-like protein [Prunus armeniaca]
Length = 262
Score = 140 bits (354), Expect = 7e-33
Identities = 61/75 (81%), Positives = 73/75 (97%)
Frame = -3
Query: 513 GISYMXVPITFRPKDFGSALWDMIRGRGTGYTMKGNIDVDTPFGAMKLPIIQEGGTTRLK 334
G++++ +PITFRPKDFGSALWDMIRG+GTGYT+KGNI+VDTPFGAMKLPI++EGGTTRL+
Sbjct: 188 GVTFIELPITFRPKDFGSALWDMIRGKGTGYTIKGNINVDTPFGAMKLPIVKEGGTTRLR 247
Query: 333 KKKEDGGDDEDEDED 289
K KEDGGDD+DEDED
Sbjct: 248 KNKEDGGDDDDEDED 262
>ref|NP_181934.1| similar to late embryogenesis abundant proteins; protein id:
At2g44060.1, supported by cDNA: 2450. [Arabidopsis
thaliana] gi|7486479|pir||T00686 similar to late
embryogenesis abundant proteins [imported] - Arabidopsis
thaliana gi|3212877|gb|AAC23428.1| similar to late
embryogenesis abundant proteins [Arabidopsis thaliana]
Length = 325
Score = 119 bits (297), Expect = 3e-26
Identities = 56/75 (74%), Positives = 65/75 (86%)
Frame = -3
Query: 513 GISYMXVPITFRPKDFGSALWDMIRGRGTGYTMKGNIDVDTPFGAMKLPIIQEGGTTRLK 334
G + VP+TFRPKDFGSALWDMIRG+GTGYT+KGNIDVDTPFGAMKLPII+EGG TRLK
Sbjct: 256 GSGLINVPMTFRPKDFGSALWDMIRGKGTGYTIKGNIDVDTPFGAMKLPIIKEGGETRLK 315
Query: 333 KKKEDGGDDEDEDED 289
K+ DD+D+DE+
Sbjct: 316 KE-----DDDDDDEE 325
>gb|AAM64433.1| similar to late embryogenesis abundant proteins [Arabidopsis
thaliana]
Length = 324
Score = 118 bits (295), Expect = 5e-26
Identities = 56/74 (75%), Positives = 64/74 (85%)
Frame = -3
Query: 513 GISYMXVPITFRPKDFGSALWDMIRGRGTGYTMKGNIDVDTPFGAMKLPIIQEGGTTRLK 334
G + VP+TFRPKDFGSALWDMIRG+GTGYT+KGNIDVDTPFGAMKLPII+EGG TRLK
Sbjct: 256 GSGLINVPMTFRPKDFGSALWDMIRGKGTGYTIKGNIDVDTPFGAMKLPIIKEGGETRLK 315
Query: 333 KKKEDGGDDEDEDE 292
K+ DD+D+DE
Sbjct: 316 KE-----DDDDDDE 324
>ref|NP_704193.1| ubiquitin carboxyl-terminal hydrolase, putative [Plasmodium
falciparum 3D7] gi|23498931|emb|CAD51009.1| ubiquitin
carboxyl-terminal hydrolase, putative [Plasmodium
falciparum 3D7]
Length = 3183
Score = 33.5 bits (75), Expect = 1.5
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = -3
Query: 363 IQEGGTTRLKKKKEDGGDDEDEDED 289
++E GTT+LK +GGDD+D+D D
Sbjct: 2666 MEEQGTTQLKDNNINGGDDDDDDND 2690
>ref|XP_206758.1| hypothetical protein XP_206758 [Mus musculus]
Length = 376
Score = 31.2 bits (69), Expect = 7.3
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -3
Query: 372 LPIIQEGGTTRLKKKKEDGGDDEDEDED*RRTAPSVY*LFFLYSICPLET 223
L E G T + K ED +DEDED+D R + S +L + CPL++
Sbjct: 181 LSACDEEGNTEGEGKDEDEDEDEDEDKDSRGSGGSQN---YLSTPCPLQS 227
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 438,341,760
Number of Sequences: 1393205
Number of extensions: 9579939
Number of successful extensions: 37347
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 29209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35691
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
