Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015110A_C01 KMC015110A_c01
(682 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T07705 hypothetical protein F17N18.140 - Arabidopsis thalia... 103 2e-21
ref|NP_567400.1| putative protein; protein id: At4g13250.1, supp... 103 2e-21
dbj|BAB78667.1| P0452F10.4 [Oryza sativa (japonica cultivar-grou... 99 5e-20
>pir||T07705 hypothetical protein F17N18.140 - Arabidopsis thaliana
gi|4753659|emb|CAB41935.1| putative protein [Arabidopsis
thaliana] gi|7268027|emb|CAB78367.1| putative protein
[Arabidopsis thaliana]
Length = 447
Score = 103 bits (257), Expect = 2e-21
Identities = 51/63 (80%), Positives = 57/63 (89%), Gaps = 1/63 (1%)
Frame = -1
Query: 682 QGRALYAAEADRLRNWAENRARFSINDAMEMYTEDTWLSVFSLSVVCAFIIL-SSTGNNL 506
QGRALYAAEADRLRNWAENR R S+ DAMEMYTE+TW+SVFSLSVVCAFIIL S+T ++
Sbjct: 385 QGRALYAAEADRLRNWAENRTRLSLTDAMEMYTENTWVSVFSLSVVCAFIILQSTTPSSF 444
Query: 505 PGT 497
PGT
Sbjct: 445 PGT 447
>ref|NP_567400.1| putative protein; protein id: At4g13250.1, supported by cDNA:
gi_16323185 [Arabidopsis thaliana]
gi|16323186|gb|AAL15327.1| AT4g13250/F17N18_140
[Arabidopsis thaliana]
Length = 496
Score = 103 bits (257), Expect = 2e-21
Identities = 51/63 (80%), Positives = 57/63 (89%), Gaps = 1/63 (1%)
Frame = -1
Query: 682 QGRALYAAEADRLRNWAENRARFSINDAMEMYTEDTWLSVFSLSVVCAFIIL-SSTGNNL 506
QGRALYAAEADRLRNWAENR R S+ DAMEMYTE+TW+SVFSLSVVCAFIIL S+T ++
Sbjct: 434 QGRALYAAEADRLRNWAENRTRLSLTDAMEMYTENTWVSVFSLSVVCAFIILQSTTPSSF 493
Query: 505 PGT 497
PGT
Sbjct: 494 PGT 496
>dbj|BAB78667.1| P0452F10.4 [Oryza sativa (japonica cultivar-group)]
gi|20804427|dbj|BAB92125.1| P0443E07.30 [Oryza sativa
(japonica cultivar-group)]
Length = 640
Score = 99.0 bits (245), Expect = 5e-20
Identities = 46/55 (83%), Positives = 53/55 (95%)
Frame = -1
Query: 682 QGRALYAAEADRLRNWAENRARFSINDAMEMYTEDTWLSVFSLSVVCAFIILSST 518
+GRA+YAAEADR+RNWAE+RARFS DAMEMYTE+TW+SVFSLSVVCAFIILSS+
Sbjct: 418 EGRAVYAAEADRIRNWAESRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSS 472
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 542,845,342
Number of Sequences: 1393205
Number of extensions: 11030572
Number of successful extensions: 19864
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19864
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30270070164
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
