Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015101A_C01 KMC015101A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193963.1| hypothetical protein; protein id: At4g22320.1 [... 47 2e-04
dbj|BAC42247.1| unknown protein [Arabidopsis thaliana] gi|288277... 47 2e-04
emb|CAC41665.1| putative plasmamembrane (H+)-ATPase [Ustilago ma... 39 0.043
gb|AAF24511.1|AF217201_1 plasma membrane H(+)-ATPase [Filobasidi... 39 0.056
emb|CAC59705.1| putative plasmamembrane (H+)-ATPase [Ustilago ma... 39 0.056
>ref|NP_193963.1| hypothetical protein; protein id: At4g22320.1 [Arabidopsis
thaliana] gi|7486827|pir||T04913 hypothetical protein
T10I14.150 - Arabidopsis thaliana
gi|2832682|emb|CAA16782.1| hypothetical protein
[Arabidopsis thaliana] gi|7269078|emb|CAB79187.1|
hypothetical protein [Arabidopsis thaliana]
Length = 237
Score = 47.0 bits (110), Expect = 2e-04
Identities = 24/47 (51%), Positives = 33/47 (70%), Gaps = 6/47 (12%)
Frame = -3
Query: 556 DVPMEESESQ------DQNQVVRQDLNESTLDLSLGLTSHDDDDENN 434
DVPME+ + + D+ +VVRQDLNEST+DL L L ++D D EN+
Sbjct: 182 DVPMEDIQVEEKIVQDDEEKVVRQDLNESTVDLGLNLNANDADAEND 228
>dbj|BAC42247.1| unknown protein [Arabidopsis thaliana] gi|28827738|gb|AAO50713.1|
unknown protein [Arabidopsis thaliana]
Length = 238
Score = 46.6 bits (109), Expect = 2e-04
Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 7/48 (14%)
Frame = -3
Query: 556 DVPMEESES-------QDQNQVVRQDLNESTLDLSLGLTSHDDDDENN 434
DVPME+ + D+ +VVRQDLNEST+DL L L ++D D EN+
Sbjct: 182 DVPMEDIQQVEEKIVQDDEEKVVRQDLNESTVDLGLNLNANDADAEND 229
>emb|CAC41665.1| putative plasmamembrane (H+)-ATPase [Ustilago maydis]
Length = 321
Score = 38.9 bits (89), Expect = 0.043
Identities = 25/57 (43%), Positives = 31/57 (53%)
Frame = -1
Query: 297 AFMFTHLLSWIVVMAYACSMFFFFFSILGGRIGLCICWNIIWYTFPISRHVFFQIFL 127
AF L+S I+ AY+ F SI GG IG+ WNI+WY FP+ FF FL
Sbjct: 264 AFCLAQLISSIIA-AYSDWGFTNVHSIEGGWIGIVWVWNIVWY-FPMDLVKFFAKFL 318
>gb|AAF24511.1|AF217201_1 plasma membrane H(+)-ATPase [Filobasidiella neoformans]
gi|6691155|gb|AAF24512.1|AF217202_1 plasma membrane
H(+)-ATPase [Filobasidiella neoformans]
Length = 998
Score = 38.5 bits (88), Expect = 0.056
Identities = 23/48 (47%), Positives = 28/48 (57%)
Frame = -1
Query: 300 LAFMFTHLLSWIVVMAYACSMFFFFFSILGGRIGLCICWNIIWYTFPI 157
LAF L+S I+ AYA F SI GG IG+ WNI+WY FP+
Sbjct: 859 LAFCLAQLVSSIIA-AYADWSFSQVHSISGGWIGIVWVWNIVWY-FPL 904
>emb|CAC59705.1| putative plasmamembrane (H+)-ATPase [Ustilago maydis]
Length = 964
Score = 38.5 bits (88), Expect = 0.056
Identities = 25/57 (43%), Positives = 30/57 (51%)
Frame = -1
Query: 297 AFMFTHLLSWIVVMAYACSMFFFFFSILGGRIGLCICWNIIWYTFPISRHVFFQIFL 127
AF L+S I+ AY F SI GG IG+ WNI+WY FP+ FF FL
Sbjct: 834 AFCLAQLISSIIA-AYGDWGFTNVHSIEGGWIGIVWVWNIVWY-FPMDLVKFFAKFL 888
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,898,645
Number of Sequences: 1393205
Number of extensions: 11128063
Number of successful extensions: 34811
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 28413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32582
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
