Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015010A_C01 KMC015010A_c01
(457 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O81361|RS8_PRUAR 40S ribosomal protein S8 gi|3264759|gb|AAC24... 163 7e-40
sp|Q08069|RS8_MAIZE 40S ribosomal protein S8 gi|7440237|pir||T04... 158 2e-38
sp|P49199|RS8_ORYSA 40S RIBOSOMAL PROTEIN S8 gi|7440236|pir||T04... 153 7e-37
ref|NP_197529.1| putative protein; protein id: At5g20290.1, supp... 149 1e-35
ref|NP_200732.1| 40S ribosomal protein S8 - like; protein id: At... 147 5e-35
>sp|O81361|RS8_PRUAR 40S ribosomal protein S8 gi|3264759|gb|AAC24583.1| 40S ribosomal
protein S8 [Prunus armeniaca]
Length = 221
Score = 163 bits (413), Expect = 7e-40
Identities = 81/104 (77%), Positives = 89/104 (84%), Gaps = 1/104 (0%)
Frame = -2
Query: 456 QHYGVDIARKKKTTS-KKDSTEEGEAAAEDGKKSNHVQRKLENRQKDRTLDAHIEEPFSG 280
QHYGV+I RKKKT + KKD+ EEGEA E+ KKSNHV KLE RQ+ RTLDAHIEE F G
Sbjct: 116 QHYGVEIGRKKKTAAAKKDTPEEGEATTEEAKKSNHVAIKLEKRQQGRTLDAHIEEQFGG 175
Query: 279 GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAAA 148
G+LLACISSRPGQCG+ADG ILEGKELEFYMKKLQ+KKGKGA A
Sbjct: 176 GKLLACISSRPGQCGKADGDILEGKELEFYMKKLQRKKGKGAGA 219
>sp|Q08069|RS8_MAIZE 40S ribosomal protein S8 gi|7440237|pir||T04088 ribosomal protein
S8 - maize gi|1498053|gb|AAB06330.1| ribosomal protein
S8
Length = 221
Score = 158 bits (400), Expect = 2e-38
Identities = 82/105 (78%), Positives = 88/105 (83%), Gaps = 3/105 (2%)
Frame = -2
Query: 453 HYGVDIARKKKT-TSKKDSTE--EGEAAAEDGKKSNHVQRKLENRQKDRTLDAHIEEPFS 283
HYGVDI RKKKT +KKD+ E E EAAAE+ KKSNHV RKLE R++ RTLD HIEE F
Sbjct: 117 HYGVDIGRKKKTPAAKKDNAEGQEVEAAAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFG 176
Query: 282 GGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAAA 148
GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ+KKGK A A
Sbjct: 177 SGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKSAVA 221
>sp|P49199|RS8_ORYSA 40S RIBOSOMAL PROTEIN S8 gi|7440236|pir||T04082 probable ribosomal
protein S8 - rice gi|968902|dbj|BAA07207.1| ribosomal
protein S8 [Oryza sativa (japonica cultivar-group)]
Length = 220
Score = 153 bits (387), Expect = 7e-37
Identities = 77/104 (74%), Positives = 83/104 (79%), Gaps = 2/104 (1%)
Frame = -2
Query: 453 HYGVDIARKKKTTSKKDST--EEGEAAAEDGKKSNHVQRKLENRQKDRTLDAHIEEPFSG 280
HYGVDI RKKK ++ EA E+ KKSNHV RKLE RQ+ RTLDAHIEE F
Sbjct: 117 HYGVDIGRKKKEPPHPRGCCGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGS 176
Query: 279 GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAAA 148
GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQ+KKGKGA+A
Sbjct: 177 GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGASA 220
>ref|NP_197529.1| putative protein; protein id: At5g20290.1, supported by cDNA:
29997., supported by cDNA: gi_15293006, supported by
cDNA: gi_15450473, supported by cDNA: gi_16974464,
supported by cDNA: gi_20258878 [Arabidopsis thaliana]
gi|15293007|gb|AAK93614.1| unknown protein [Arabidopsis
thaliana] gi|15450474|gb|AAK96530.1| AT5g20290/F5O24_180
[Arabidopsis thaliana] gi|16974465|gb|AAL31236.1|
AT5g20290/F5O24_180 [Arabidopsis thaliana]
gi|20258879|gb|AAM14111.1| unknown protein [Arabidopsis
thaliana] gi|21592577|gb|AAM64526.1| 40S ribosomal
protein S8-like [Arabidopsis thaliana]
Length = 222
Score = 149 bits (376), Expect = 1e-35
Identities = 77/107 (71%), Positives = 90/107 (83%), Gaps = 6/107 (5%)
Frame = -2
Query: 453 HYGVDIARKKKTTS--KKDSTEEGEAAA----EDGKKSNHVQRKLENRQKDRTLDAHIEE 292
HYGV++ RKKK+ S KKD EEGE AA E+ KKSNH+ RK+ +RQ+ R+LD+HIE+
Sbjct: 117 HYGVELGRKKKSASSTKKDG-EEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIED 175
Query: 291 PFSGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA 151
F+ GRLLACISSRPGQCGRADGYILEGKELEFYMKK+QKKKGKGAA
Sbjct: 176 QFASGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGKGAA 222
>ref|NP_200732.1| 40S ribosomal protein S8 - like; protein id: At5g59240.1
[Arabidopsis thaliana]
Length = 219
Score = 147 bits (371), Expect = 5e-35
Identities = 77/104 (74%), Positives = 82/104 (78%), Gaps = 1/104 (0%)
Frame = -2
Query: 456 QHYGVDIARKKKTTSKKDSTEEGEAAA-EDGKKSNHVQRKLENRQKDRTLDAHIEEPFSG 280
QHYGVDI RKKK GEA E+ KKSNHVQRKLE RQ+ R LD+H+EE FS
Sbjct: 125 QHYGVDIGRKKK----------GEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSS 174
Query: 279 GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAAA 148
GRLLACI+SRPGQCGRADGYILEGKELEFYMKKLQKKKGK A A
Sbjct: 175 GRLLACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGKNAGA 218
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 402,665,320
Number of Sequences: 1393205
Number of extensions: 8888491
Number of successful extensions: 30260
Number of sequences better than 10.0: 107
Number of HSP's better than 10.0 without gapping: 28627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30179
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11413361193
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
