Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014997A_C01 KMC014997A_c01
(483 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196881.1| putative protein; protein id: At5g13770.1 [Arab... 66 2e-10
emb|CAD41335.1| oj991113_30.17 [Oryza sativa (japonica cultivar-... 35 0.43
dbj|BAB92918.1| P0460C04.10 [Oryza sativa (japonica cultivar-gro... 33 1.6
ref|NP_198814.1| putative protein; protein id: At5g39980.1 [Arab... 32 3.6
ref|NP_471022.1| similar to ATP-dependent dsDNA exonuclease SbcC... 31 6.2
>ref|NP_196881.1| putative protein; protein id: At5g13770.1 [Arabidopsis thaliana]
gi|10177342|dbj|BAB10598.1|
emb|CAB69839.1~gene_id:MXE10.4~similar to unknown
protein [Arabidopsis thaliana]
Length = 563
Score = 66.2 bits (160), Expect = 2e-10
Identities = 31/47 (65%), Positives = 38/47 (79%)
Frame = -2
Query: 482 QIDQLVKLFQDMKMEGTRLDQRLYQSAWNAFIEAGLQLQAKWLQESF 342
+ID+L++L QDMK+EGTRLD RLY SA NA +AGL Q +WLQESF
Sbjct: 497 RIDELMRLLQDMKVEGTRLDARLYSSALNALRDAGLNSQIRWLQESF 543
>emb|CAD41335.1| oj991113_30.17 [Oryza sativa (japonica cultivar-group)]
Length = 1024
Score = 35.0 bits (79), Expect = 0.43
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = -2
Query: 482 QIDQLVKLFQDMKMEGTRLDQRLYQSAWNAFIEAGLQLQAKWLQE 348
++++ LFQ+MKM G D Y ++F +AGL QA+WL E
Sbjct: 472 KVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFE 516
>dbj|BAB92918.1| P0460C04.10 [Oryza sativa (japonica cultivar-group)]
Length = 665
Score = 33.1 bits (74), Expect = 1.6
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = -2
Query: 482 QIDQLVKLFQDMKMEGTRLDQRLYQSAWNAFIEAGLQLQAKWL 354
++D+ KLF+ ++ GT +D LYQ+ A+ AGL Q+K L
Sbjct: 436 KLDRAGKLFEKLREAGTEIDPVLYQTMVVAYERAGLVSQSKRL 478
>ref|NP_198814.1| putative protein; protein id: At5g39980.1 [Arabidopsis thaliana]
gi|10176990|dbj|BAB10222.1|
gb|AAD55291.1~gene_id:MYH19.18~similar to unknown
protein [Arabidopsis thaliana]
Length = 678
Score = 32.0 bits (71), Expect = 3.6
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -2
Query: 482 QIDQLVKLFQDMKMEGTRLDQRLYQSAWNAFIEAGLQLQAKWL 354
++D+ LFQ ++ G +DQ LYQ+ A+ GL AK L
Sbjct: 450 KLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRL 492
>ref|NP_471022.1| similar to ATP-dependent dsDNA exonuclease SbcC [Listeria innocua]
gi|25515795|pir||AE1643 ATP-dependent dsDNA exonuclease
SbcC homolog sbcC [imported] - Listeria innocua (strain
Clip11262) gi|16414173|emb|CAC96917.1| similar to
ATP-dependent dsDNA exonuclease SbcC [Listeria innocua]
Length = 1023
Score = 31.2 bits (69), Expect = 6.2
Identities = 21/61 (34%), Positives = 36/61 (58%), Gaps = 2/61 (3%)
Frame = -2
Query: 482 QIDQLVKLFQDMKMEGTRLDQRLYQSAWNAFIEA--GLQLQAKWLQESFHVS*FSKAEIF 309
Q +Q+ K+F++ + E TRL+ L QSA N ++A LQ+Q + +ES + F E +
Sbjct: 686 QAEQVDKIFREAEKETTRLESTL-QSAENTTLDAKEALQVQREVFKESMKQNDFPTYEAY 744
Query: 308 Q 306
+
Sbjct: 745 K 745
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 393,259,075
Number of Sequences: 1393205
Number of extensions: 7885026
Number of successful extensions: 23689
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 21245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23686
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
