Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014969A_C01 KMC014969A_c01
(519 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_503357.1| Leucine rich repeat and Zinc-binding dehydrogen... 32 5.7
gb|EAA15557.1| hypothetical protein [Plasmodium yoelii yoelii] 31 7.5
ref|NP_196375.1| transcription factor-like protein; protein id: ... 31 9.8
gb|AAO34706.1| ethylene response factor 4 [Lycopersicon esculentum] 31 9.8
>ref|NP_503357.1| Leucine rich repeat and Zinc-binding dehydrogenase [Caenorhabditis
elegans] gi|14574377|gb|AAK68507.1|AC025722_2
Hypothetical protein Y50D4C.2 [Caenorhabditis elegans]
Length = 554
Score = 31.6 bits (70), Expect = 5.7
Identities = 24/81 (29%), Positives = 32/81 (38%), Gaps = 8/81 (9%)
Frame = +3
Query: 51 HGFNFSGTLRAQSIHKILLNNMQT*PATMIFRVNTQFFSGLG--------SMPLS*SLFA 206
H FNF T IH+ L PA I T F LG ++ +S S
Sbjct: 17 HHFNFQMTSVRAQIHQQLYKTKTIAPALTITNAVTGGFDELGEFGLDDVENLMISNSRLT 76
Query: 207 SIIDFPFKYKEKIYPKTCTNY 269
+ +FPF K K +C N+
Sbjct: 77 TFTNFPFMPKLKTLDVSCNNF 97
>gb|EAA15557.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 884
Score = 31.2 bits (69), Expect = 7.5
Identities = 21/72 (29%), Positives = 39/72 (54%)
Frame = +1
Query: 301 LILKSKSTLEISFRERAVYEFQN*IEEREVDETENSHDIT*LELVPDSLCSLPLFLPLLL 480
+IL+ K+ L I+ + AV + N I + E++ +N + + ++++P +PL L LL
Sbjct: 81 IILELKNALNITEKPNAV-KIINGISQDEINVLDNWYILNKIKIIPCLFEDIPLNLGLLN 139
Query: 481 GFGLAFPAFKGK 516
P+FK K
Sbjct: 140 SLYAIDPSFKNK 151
>ref|NP_196375.1| transcription factor-like protein; protein id: At5g07580.1,
supported by cDNA: gi_15529283, supported by cDNA:
gi_16974422 [Arabidopsis thaliana]
gi|11358894|pir||T49897 transcription factor-like
protein - Arabidopsis thaliana
gi|7576196|emb|CAB87947.1| transcription factor-like
protein [Arabidopsis thaliana]
gi|9759579|dbj|BAB11436.1| transcription factor-like
protein [Arabidopsis thaliana]
gi|15529284|gb|AAK97736.1| AT5g07580/MBK20_1
[Arabidopsis thaliana] gi|16974423|gb|AAL31137.1|
AT5g07580/MBK20_1 [Arabidopsis thaliana]
Length = 207
Score = 30.8 bits (68), Expect = 9.8
Identities = 20/38 (52%), Positives = 21/38 (54%), Gaps = 6/38 (15%)
Frame = -2
Query: 518 NFPLKAGKASPNPSNSGRKRGRE------QRESGTSSS 423
NFPL AGK P+NSGRKR R QR SSS
Sbjct: 165 NFPLDAGKYEA-PANSGRKRKRSDVHEELQRTQSNSSS 201
>gb|AAO34706.1| ethylene response factor 4 [Lycopersicon esculentum]
Length = 201
Score = 30.8 bits (68), Expect = 9.8
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = -2
Query: 518 NFPLKAGKASPNPSNSGRKRGREQR 444
NFPL AGK+ P+N GRKR RE +
Sbjct: 174 NFPLDAGKSGA-PANVGRKRRRENK 197
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 427,032,229
Number of Sequences: 1393205
Number of extensions: 8462057
Number of successful extensions: 21816
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 21347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21806
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
